RNA id: TU576537


Basic Information

Item Value
RNA id TU576537
length 970
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G507887
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41367960 ~ 41368929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttcttcggcttgcaagcctccccctttcctccaaacatagcgatggtcattagtgccaaacagttctatttttgtttcattacaccataggatatttctccaaaaagtacgatctttgtccccatgtgcagttgcaaaccgtagaccggctttttttatgtcggttttggagcagtggcttcgtccttgctgagcagcctttcaggttatgtcaatataggactagttttactgtggatgtacatacttttgtacctgtttccttcacaaggtcctttgctgttgttctgagattgattgcaccaaagtacgttcatctctaggagacagaacgcgtctccttcctgagcagtgtgacggctgcgtggtcccaaggtgtttatacttgcgcactattgtttgtacagatgaacgtggtaccttcaggcatttggaaattgctcccaaggatgatcagacttgtggagttctacaattttctttctgaggtcttggctgatttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtatacctccaattgactcaaatgatgtcaattagcctaccagaagcttgtaaagctatgacataattttctggaattttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttcttacccactggaattgtgatacagtgaaataattgttggaaaaatgacttgtgtcatgcacaaagtagatgtcctaaccgacttgccataaccatagtttgttaacagaaaatttgtggagtggttgaaaaataagttttaataactccaacctaagtgtatgtaaacttccgacttcaactgtatagtttCATACGTCTTACCCGGTCAGAcaatatcatactaattggaaTACATTACATACCATACATCTTGAAGGACATATAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU576265 lncRNA downstream 99635 41268023 ~ 41268325 (-) True G507626
TU576244 lncRNA downstream 115895 41251860 ~ 41252065 (-) True G507605
TU576069 lncRNA downstream 238398 41129332 ~ 41129562 (-) True G507437
TU576048 lncRNA downstream 254035 41099270 ~ 41113925 (-) True G507417
TU576047 lncRNA downstream 270861 41096871 ~ 41097099 (-) True G507416
TU576544 lncRNA upstream 9843 41378772 ~ 41379042 (-) True G507894
TU576545 lncRNA upstream 10315 41379244 ~ 41379486 (-) True G507895
TU576610 lncRNA upstream 94649 41463578 ~ 41464095 (-) True G507945
TU576613 lncRNA upstream 111226 41480155 ~ 41480364 (-) True G507948
TU576618 lncRNA upstream 117413 41486342 ~ 41486621 (-) True G507953
XR_002473698.2 mRNA downstream 67978 41298126 ~ 41299982 (-) True LOC110525030
XR_005052414.1 mRNA downstream 127126 41240023 ~ 41240834 (-) True LOC118965078
XR_005052107.1 mRNA downstream 758050 40607825 ~ 40609910 (-) True LOC118964868
XR_002473851.2 mRNA downstream 806343 40547422 ~ 40561617 (-) False LOC110525965
XM_021606514.2 mRNA upstream 21741 41390670 ~ 41392415 (-) True gadd45ga
XM_036980125.1 mRNA upstream 27312 41396241 ~ 41403845 (-) False creb3l3l
XM_036980126.1 mRNA upstream 27312 41396241 ~ 41404585 (-) False creb3l3l
XM_021606513.2 mRNA upstream 27312 41396241 ~ 41404846 (-) True creb3l3l
XM_021606515.2 mRNA upstream 37148 41406077 ~ 41429279 (-) False nim1k
TU575676 other downstream 825631 40540659 ~ 40542329 (-) True G507063
TU575349 other downstream 1478029 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 1529800 39837648 ~ 39838160 (-) True LOC110525932
TU575254 other downstream 1603184 39763291 ~ 39764776 (-) True LOC110525929
TU575200 other downstream 1743616 39623685 ~ 39624344 (-) True G506641
TU576563 other upstream 52095 41421024 ~ 41461922 (-) True G507906
TU576567 other upstream 66046 41434975 ~ 41439014 (-) True znf131
TU577033 other upstream 451926 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 775168 42144097 ~ 42144885 (-) True G508891
TU577801 other upstream 1003512 42372441 ~ 42403220 (-) False G509034

Expression Profile