RNA id: TCONS_00000285


Basic Information

Item Value
RNA id TCONS_00000285
length 444
lncRNA type retained_intron
GC content 0.40
exon number 3
gene id XLOC_000159
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 12172322 ~ 12193239 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAATATTTATCTAGAACATGCGTAGGTACCTTTAAactgtgttgttttttatgtatttgcagGTTGACAATATTTATAGTTATAGCTTTGGTGGTCCTGCAGATTATTTTGGTCCAAGTGTTTTTCCTGCAGGACAAACTCTCCCCTGAAGACAAAGAAAAGCCCCTTGCAATAAACAATAGAAAAGCATTTCACAGCTTCAATTACTTTTTCTTCTTCTATAATGTGATTATGGGGTTGAGCAACTGCGTTTTACGCCTTGTGAGCAGCTGCATTGTGGGAACATGGCTAGTGTCAAGGATTGATCGGACAATCATGCAACGTGGTTATGAATCCATGGATCCAGGATACAGTACATGGATAGGGATGATTTTTGCTGATCATTACCACAGTAACCCAGTTATGGTGTCTTTCTGCCATCTGCTGCTTGGCAGAACACTGGA

Function

GO:

id name namespace
GO:0045494 photoreceptor cell maintenance biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0071939 vitamin A import biological_process
GO:0007634 optokinetic behavior biological_process
GO:0034633 retinol transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0031090 organelle membrane cellular_component
GO:0031984 organelle subcompartment cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-116 Acts upstream of or within several processes, including photoreceptor cell maintenance; photoreceptor cell outer segment organization; and retinol transport. Located in organelle membrane and plasma membrane. Is expressed in digestive system; endodermal cell; somite; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDART00000141894

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000280 lncRNA upstream 5111 12172322 ~ 12181039 (+) False XLOC_000159
TCONS_00003037 lncRNA upstream 137641 12046492 ~ 12048509 (+) False XLOC_000155
TCONS_00002814 lncRNA upstream 252474 11933317 ~ 11933676 (+) True XLOC_000152
TCONS_00002813 lncRNA upstream 1398833 10780928 ~ 10787317 (+) True XLOC_000143
TCONS_00000251 lncRNA upstream 1522625 10662312 ~ 10663525 (+) True XLOC_000139
TCONS_00000292 lncRNA downstream 141835 12329543 ~ 12333372 (+) True XLOC_000162
TCONS_00000297 lncRNA downstream 160529 12348237 ~ 12355565 (+) False XLOC_000164
TCONS_00000298 lncRNA downstream 160559 12348267 ~ 12357666 (+) False XLOC_000164
TCONS_00003038 lncRNA downstream 485277 12672985 ~ 12677022 (+) False XLOC_000168
TCONS_00003039 lncRNA downstream 485283 12672991 ~ 12677022 (+) False XLOC_000168
TCONS_00000281 mRNA upstream 3891 12177195 ~ 12182259 (+) False XLOC_000159
TCONS_00000279 mRNA upstream 47538 12135129 ~ 12138612 (+) True XLOC_000158
TCONS_00000277 mRNA upstream 88332 12068800 ~ 12097818 (+) False XLOC_000157
TCONS_00000275 mRNA upstream 127711 12049229 ~ 12058439 (+) False XLOC_000156
TCONS_00000286 mRNA downstream 7992 12195700 ~ 12228116 (+) False XLOC_000160
TCONS_00000287 mRNA downstream 8980 12196688 ~ 12199650 (+) True XLOC_000160
TCONS_00000288 mRNA downstream 43770 12231478 ~ 12257979 (+) True XLOC_000161
TCONS_00000289 mRNA downstream 107434 12295142 ~ 12334540 (+) False XLOC_000162
TCONS_00000290 mRNA downstream 114205 12301913 ~ 12315139 (+) False XLOC_000162
TCONS_00000278 other upstream 108672 12071921 ~ 12077478 (+) True XLOC_000157
TCONS_00000274 other upstream 138782 12046591 ~ 12047368 (+) True XLOC_000155
TCONS_00000271 other upstream 152872 12015116 ~ 12033278 (+) False XLOC_000154
TCONS_00000272 other upstream 154850 12015156 ~ 12031300 (+) True XLOC_000154
TCONS_00000263 other upstream 490982 11691748 ~ 11695168 (+) True XLOC_000148
TCONS_00000299 other downstream 160650 12348358 ~ 12357076 (+) True XLOC_000164
TCONS_00000301 other downstream 206501 12394209 ~ 12395287 (+) False XLOC_000165
TCONS_00000306 other downstream 243620 12431328 ~ 12431442 (+) True XLOC_000166
TCONS_00000307 other downstream 355651 12543359 ~ 12543475 (+) True XLOC_000167
TCONS_00000309 other downstream 548212 12735920 ~ 12736034 (+) True XLOC_000169

Expression Profile

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