RNA id: XM_021610019.2


Basic Information

Item Value
RNA id XM_021610019.2
length 2219
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110528175
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62325429 ~ 62342019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATAGTTTTTCGTTAACCTTATTACAGTTAAGGACACCGAGCAGCACATTCTCCCATAATAAACAAGTCATCAAAAATCTTATCAATTTTAAATCTACAAAAATCTTGTTATCATTTCTTTACATGTAGACAATGTCAAAATAAATGCTAAACTGTTTCTGGACGCTCATCACAAAAAGTACAGTTAGTGTTAATGTCTTTTTTGAGTTTCTTCAGGTAACGATTCGTAGGGTAATATTTATGGATTTGACCTTTCACTACactttttaaaaatacatttttaacaagATCAGCTTTAAAACCATCGCTTTCTGATTAAATAATCTTTATTTCATATTCAATGGGCTATATTTTAAACAGAGGATTAACGTcaatacattacatcacattTATATTTTACACTTTCCATGCTCTAGCACTACTGTTTCCACCAATCACAGCACCCAAAGGAAACAATAACGTCATATGTGTATCCTGGGGCCTCCTTCCTTTCAAAAAAATAAAACGATTAAAAAAATAATGGTGTCGCACCGCCCTTTTATTTAGCAATTAGCCagcaactaccccccccccccagtgattTTATACCAGCTTTTGAGATAATCGACGCCATTGCTGAGGCCCACGAAGGATTTGAAAGATGTCTCTGGGGGGCTCTCCTGTGACGGTGGTCCAGCTCCCTGGGGGTCATTTCCAGGTGCAGGGGGTGATCCAATCGTCGGTCATCCAGTCCCCACAGGTGCAGACTGTTCAGGGCCAGGGCTCAGACAGTGACGACTCCCAGGACTCCTCAGACAGTGGAGCCTCCGCCCAGAAGACCAGAGAGATACTGGCCAGACGGCCCTCCTACAGAAAGATCCTCAATGAGCTGTCTGCTGAGGAGGTGGCGTCACGGAACGAGGGAGAGGATGACAACCCTGCTTCCTCTGGCATGACCACAGTGACAGTGCCCAACACCCAGACAATCTACCAGACCAGCAGCGGCCAGTACATTACCATCGCCCCTAACGGCACCATTCAACTGGCCAACCCGGGGTCAGAGAGTCTTCAGGGCTTACAGACTCTCACCATGACCAACTCAGGCCAACAGCAGGGCACCACCATCCTACATTATGCCCAGACGCCCGACGGACAGCAGCTACTCGTGCCCAGCAACCAGGTGGTCGTACAGAGTGCAGGAGGAGAGATGCAGACGTACCAGATCCGCACGGCGCCCACAGCGCAACAGACTGTGGTCATGACTTCCCCTGTAGGAATGTCTGAGCAgaagactggcgaccccaccatGAAGAGAGAGATCCGACTCGCTaagaacagGGAAGCGGCCCGTGAGTGTCGCAGGAAGAAGAAGGAATACGTCAAGTGTCTGGAGAACCGTGTGGCCGTGCTGGAGAACCAGAACAAGACTCTCATTGAGGAACTCAAGACGTTAAAGGACCTGTACCATGTCAAAACAGGATAACCAGGAGGACAAGAAGAGAAGCCGGCCAGCAAGCAAGACTTTTACCGTCAGCGAGCGGCTTTGTTCTGCCACATGGACAACGCGAGGTTAACCGGGAACACCTTTAATTTCAGACCTGAAATCATCCTCCTCAGTTTGTGTTTTATACTGTTTGTTTTAACAAACACGGTGGCCATGGTGTTCCATATAAAAGACAATGaaaagagtgtgaaagagaggtCTGTTTTTAATCAGAACTCTTTTTATTGAGCTAACAGATTGGATAACCAATGCTTAATGTTTATTCGTGTATATTTTGTGAGCACATGGAAGGTGTGAATTTTGAGCATAATCATTGACAATCAATTTCCAATTGTGTCCCCCTTTACCAGAATCCACATtttcctttatttatttttttaaagtgtagCAGTGGGCTCAATCTGCTGTTTTTAACATCAAACAATTATCAGCTGAATTGTTATTGTTTGATGACCTCATGGTGTGATTCATGTGTCTTATGTGAACCAGCTATTTTCACCCCACACCCCTTTTTCCCCCATGAGGAAATGTTATAAGTCTCATTCCTTACCCTTTTAAGTGGTATTTGATAAGATTGTCTTAGTAACAGCTAATTCAGCTTTACATAATCTATCAGGGAGAACACACAATGTCAGGgtaatatttattttatatttctgGGGGCAAATCAAATGAAAAGAGGGAAAGCAATGTCACTCATTCAGTAAATGGAAATAAATATTTTTCCAAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719354 lncRNA upstream 1351 62321144 ~ 62324085 (+) True G632810
TU719369 lncRNA upstream 69190 62253695 ~ 62256246 (+) True G632824
TU719367 lncRNA upstream 69786 62253089 ~ 62255650 (+) True G632823
TU719317 lncRNA upstream 97428 62223745 ~ 62228008 (+) False LOC110528171
TU719415 lncRNA downstream 1478 62343497 ~ 62343731 (+) True G632858
TU719890 lncRNA downstream 155463 62497482 ~ 62497894 (+) True G633264
TU719898 lncRNA downstream 160454 62502473 ~ 62502708 (+) True G633272
TU719929 lncRNA downstream 187941 62529960 ~ 62596889 (+) True G633296
TU719907 lncRNA downstream 191203 62533222 ~ 62538643 (+) False G633275
XM_021610010.2 mRNA upstream 6325 62241985 ~ 62319111 (+) False LOC110528174
XM_021610011.2 mRNA upstream 6325 62241985 ~ 62319111 (+) False LOC110528174
XM_021610013.2 mRNA upstream 6325 62241985 ~ 62319111 (+) False LOC110528174
XM_021610014.2 mRNA upstream 6325 62241985 ~ 62319111 (+) True LOC110528174
XM_021610012.2 mRNA upstream 6630 62241985 ~ 62318806 (+) False LOC110528174
XM_021610033.2 mRNA downstream 24922 62366941 ~ 62482607 (+) False LOC110528177
XM_036983720.1 mRNA downstream 24922 62366941 ~ 62482607 (+) False LOC110528177
XM_036983721.1 mRNA downstream 46072 62388091 ~ 62482607 (+) True LOC110528177
XM_021610041.2 mRNA downstream 498896 62840915 ~ 62843329 (+) True LOC110528183
XR_005052713.1 mRNA downstream 518530 62860549 ~ 62864970 (+) True LOC110528184
TU719353 other upstream 94087 62230515 ~ 62231349 (+) True G632809
TU719313 other upstream 185445 62139516 ~ 62139991 (+) True G632776
TU718637 other upstream 633789 61691281 ~ 61691647 (+) True G632146
TU718347 other upstream 878689 61386032 ~ 61446747 (+) True LOC110528160
TU718031 other upstream 1088387 61235478 ~ 61237049 (+) True G631568
TU720268 other downstream 587379 62929398 ~ 62929699 (+) True G633613
TU721299 other downstream 1278334 63620353 ~ 63621531 (+) True LOC110528206
TU721636 other downstream 1854022 64196041 ~ 64201232 (+) True LOC110528222
TU722203 other downstream 1976181 64318200 ~ 64326259 (+) False G635332
TU722204 other downstream 1976181 64318200 ~ 64326259 (+) True G635332

Expression Profile