Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000297 |
| length | 840 |
| lncRNA type | retained_intron |
| GC content | 0.51 |
| exon number | 4 |
| gene id | XLOC_000164 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 12348213 ~ 12361930 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0048268 | clathrin coat assembly | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0072583 | clathrin-dependent endocytosis | biological_process |
| GO:0030672 | synaptic vesicle membrane | cellular_component |
| GO:0030125 | clathrin vesicle coat | cellular_component |
| GO:0030130 | clathrin coat of trans-Golgi network vesicle | cellular_component |
| GO:0030132 | clathrin coat of coated pit | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005905 | clathrin-coated pit | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0099631 | postsynaptic endocytic zone cytoplasmic component | cellular_component |
| GO:0032050 | clathrin heavy chain binding | molecular_function |
| GO:0005198 | structural molecule activity | molecular_function |
| id | description |
|---|---|
| ko04144 | Endocytosis |
| ko04142 | Lysosome |
| ko04961 | Endocrine and other factor-regulated calcium reabsorption |
| ko04721 | Synaptic vesicle cycle |
| ko05100 | Bacterial invasion of epithelial cells |
| ko05016 | Huntington disease |
| ko04131 | Membrane trafficking |
| ko04147 | Exosome |
| id | description |
|---|---|
| ZDB-GENE-040426-1986 | Predicted to enable clathrin heavy chain binding activity. Predicted to be involved in clathrin coat assembly and clathrin-dependent endocytosis. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin vesicle coat. Predicted to be active in plasma membrane; postsynaptic endocytic zone cytoplasmic component; and synaptic vesicle membrane. Orthologous to human CLTA (clathrin light chain A). |
| ensembl_id | ENSDART00000142900 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000292 | lncRNA | upstream | 14865 | 12329543 ~ 12333372 (+) | True | XLOC_000162 |
| TCONS_00000284 | lncRNA | upstream | 160529 | 12184497 ~ 12187708 (+) | False | XLOC_000159 |
| TCONS_00000285 | lncRNA | upstream | 160529 | 12186150 ~ 12187708 (+) | True | XLOC_000159 |
| TCONS_00000280 | lncRNA | upstream | 167198 | 12172322 ~ 12181039 (+) | False | XLOC_000159 |
| TCONS_00003037 | lncRNA | upstream | 299728 | 12046492 ~ 12048509 (+) | False | XLOC_000155 |
| TCONS_00003038 | lncRNA | downstream | 317420 | 12672985 ~ 12677022 (+) | False | XLOC_000168 |
| TCONS_00003039 | lncRNA | downstream | 317426 | 12672991 ~ 12677022 (+) | False | XLOC_000168 |
| TCONS_00000308 | lncRNA | downstream | 317426 | 12672991 ~ 12677022 (+) | True | XLOC_000168 |
| TCONS_00003040 | lncRNA | downstream | 569061 | 12924626 ~ 12937089 (+) | False | XLOC_000172 |
| TCONS_00003041 | lncRNA | downstream | 569102 | 12924667 ~ 12937089 (+) | False | XLOC_000172 |
| TCONS_00000293 | mRNA | upstream | 3445 | 12335816 ~ 12344792 (+) | True | XLOC_000163 |
| TCONS_00000289 | mRNA | upstream | 13697 | 12295142 ~ 12334540 (+) | False | XLOC_000162 |
| TCONS_00000291 | mRNA | upstream | 14983 | 12302073 ~ 12333254 (+) | False | XLOC_000162 |
| TCONS_00000290 | mRNA | upstream | 33098 | 12301913 ~ 12315139 (+) | False | XLOC_000162 |
| TCONS_00000288 | mRNA | upstream | 90258 | 12231478 ~ 12257979 (+) | True | XLOC_000161 |
| TCONS_00000300 | mRNA | downstream | 38640 | 12394205 ~ 12397780 (+) | False | XLOC_000165 |
| TCONS_00000302 | mRNA | downstream | 38699 | 12394264 ~ 12397300 (+) | False | XLOC_000165 |
| TCONS_00000303 | mRNA | downstream | 38730 | 12394295 ~ 12397352 (+) | False | XLOC_000165 |
| TCONS_00000304 | mRNA | downstream | 38829 | 12394394 ~ 12400783 (+) | False | XLOC_000165 |
| TCONS_00000305 | mRNA | downstream | 38914 | 12394479 ~ 12397886 (+) | True | XLOC_000165 |
| TCONS_00000278 | other | upstream | 270759 | 12071921 ~ 12077478 (+) | True | XLOC_000157 |
| TCONS_00000274 | other | upstream | 300869 | 12046591 ~ 12047368 (+) | True | XLOC_000155 |
| TCONS_00000271 | other | upstream | 314959 | 12015116 ~ 12033278 (+) | False | XLOC_000154 |
| TCONS_00000272 | other | upstream | 316937 | 12015156 ~ 12031300 (+) | True | XLOC_000154 |
| TCONS_00000263 | other | upstream | 653069 | 11691748 ~ 11695168 (+) | True | XLOC_000148 |
| TCONS_00000301 | other | downstream | 38644 | 12394209 ~ 12395287 (+) | False | XLOC_000165 |
| TCONS_00000306 | other | downstream | 75763 | 12431328 ~ 12431442 (+) | True | XLOC_000166 |
| TCONS_00000307 | other | downstream | 187794 | 12543359 ~ 12543475 (+) | True | XLOC_000167 |
| TCONS_00000309 | other | downstream | 380355 | 12735920 ~ 12736034 (+) | True | XLOC_000169 |
| TCONS_00000315 | other | downstream | 492496 | 12848061 ~ 12853263 (+) | False | XLOC_000171 |
