RNA id: XM_021612161.2


Basic Information

Item Value
RNA id XM_021612161.2
length 2922
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110529708
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26422495 ~ 26426074 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTAAAACGTGTTATGTCCatgtcctctatccatctctatggcaATAGGCACAACTCGGATGTAAAGTCGTGTTTTTTTAAGTTGGCAAAATGTCACATGCGTCTACTTATATCAGTGCTTTCATAACAACATAACCATTACGAAACTTATATtcaatcaaataagcctcacgaaGCAAATTAACAATGAcgtttttgttgaccaaattcggcACCCGCTCATTGGCGTCTACACAAAAATGTCTCACTTCATGGCTTTATTTTCTTGACAGATTTTGTTCAGAGTaaaacctctcgcttcgccttTTCTTCTctgaaagaggaggaaggcttCTATTTTGCTTTGTTTTGGTAGCATCTATTTTGCGAACTGTCTAAATAGCTACGTCACTGAGCGAAGTGCAAACAGTATTTTTGACAGAGAGGAACTTTGAGAGAATACAGATTTGATCCTGATGACATCCCAGTAACTGCACTTGAAACACATGGCGAGCTGTGGTGAGGTGGACCACTCAGTGGACTCTGTGTCCTCCTCAAAGGTAGAAGACGGAGGGGACGCCTTCACTGGTGACTCCCCCAGCTCACCTACCCCCTCGGCCAACCCCGTGCCGGAATGTGCCATCTGCCTCCAGACCTGTGTCCACCCAGTTCGCCTGCCCTGCCGCCACGTTTTCTGTTTCCTGTGCGTCAAAGGAGCCTCCTGGCACAGCAAGCGCTGCGCTCTTTGCCGACAGGAAGTACCTGAGGACTTCCTGGAGCATCCAACTCTGCTGTCCCCAGAGGAGCTGAAGGCAGCAGCCgcaggaggacgaggaggaaccGGGCCAGGGAGCGCTGGCGGAGACCATGCATGGTACTACGAGGGGAGGAACGGCTGGTGGCAGTATGACGAGAGGACCAGCCGTGAGCTGGAGGACGCTTTCGCCAAGGGCAGGAAGAGCGCTGAGATGCTGATTGCTGGCTTCCTGTACGTGGCTGACCTGGAGAACATGGTGCAGTATCGCCGCAACGAGCATGGTCGCCGCCGACGCATGAAGCGTGATGTGGTAGACATTCCCAAAAAGGGCGTGGCCGGACTCAGACTGGACCCTGACCCCACCCCGCCAGTTGTTGCCGTGGCAGCTGTTCCGGTCACAGCGGCAACAGTGGAACGGCCAAGCTCTGCTGATGGGGAGGATGTGACTGGACGGTCGCAGGCGGGGGGCTTAGGGGTTGTCATCCCGGCTCCTCCAGTCAGACCCCCCACAGTCCTGGGTGCCCACCCTGCCACCTCAGCCTCCATCTCCCTTGAAGACTCTCTGTCCCAGCTCCTCATCAGCCaaccagaggaggaggaagaggagaatgaAGAGGTAGCTTCAAGAATAAGCCAGGTGTACGAGTCAGCATCTGGTAGCAGTGAGGATgaggatggtggtggtgatgaagtAGGGCGGGggtgggatagggagagggggggacGGGAAGTTGGGTCTCGACGGAGGCCCAGACATAGACTCCTACAGCGCCGGCTCAGAGAGGTCCAGCCTGACAGACTGCCACCTGGAGGTGGGTCCTCCAGCGGAGGCCTCAGTGTGCGCTCACGCAGCCCTGACGGTCAATGCACTGTCACTGAGGTGTGACCACAACTGGACCACTGTCTCTGCACTCAACCGGCTCAGCAAAAAACAAATTCACTCCATGCCCATGGTGGTATTGAATAACCCAGTGGAAGACACCAGATCAGCCATTTGCATTACATATACAGCAACATAGACTAATCCATAATTTATAATACGTCAGCCAGTAAGATTATGCAAAATAGCACACATAATAAAATAGCCCATACTGTTCCACTCTCTGCCACTAACCATTTGAGCCTGTGTTAGTACCAAAAGGCATGGTCAGCCTTAATAGGCTATCTACAGAGAAATTGTGAAATGAGGTTTGAGGTTTGGAGATGACTTAACCTTTTAAATGTAGCATCCCATCTCTAACAGGAGGCAAAAATCTTGTTTTGTCGGTACATGGCTGTTTACTGTAATGATTGTTCTAACATATCCATTGAGCGTacgtgagtcagtgtgtgtattgAAGTCATAGTCCAGAAGAATATAAAAATGTTTCGTAAATGTCCAATGCAGCTGATTTGATCTCGATATCAAATTagttctgggtaacaattaagtaccttaaaTAGCACCTTTTGTTTGGTATTTTATTACGACCCACAAGAGGTCGCTGTAAGCTTGGCCACAACAGTTCTGCAAACCCACCCCATAGATCCCCATCTTGACACAGAACTCACCAAGCCACCAATAGGAAGACATACTGTGTCTTTCTCGCCTGTTTGCAGCCGTTGAAACTAATTTCAAGTGAAAACACTTGTAACTACTGAATGGAAGGTATTTTAAATTACAACAAGATCACAAATATGCACAGAGGTTCTATACAACAGAGGTGAAGCATGGAAATGAGCAAGCAGAGATTGAGAATGAAAGCTTCTTAAATCTGTCAGTAGCTATGCGCACGCTCAATTCAAACGTGATGCATGTCACACATATTCCTAACTAGAAACGGGGACCTACAAAGACAGGTAGAAGTAGGAAGAAGTGATTGGAGATTTTTTTACGAAGGACTTCCTCATGAAAGATGAAACCAATGAAGATGTTGAGAAAAGATGCTGAAGATACTATGAAAACTGGATGGAAGATGCATTGCGCACACACCTGATCATGAGTGTTTTGAGTTGTTTGAACTTTGAACCTATTATTTTGATACTCTTCTGTCAGTTGTTTATTGCCATGTTTTTAAAAGTATCTTTGACTTTTAATGAATATGATTTAACTTCCATGTGTGGTCTTGTTTAACTGTGATGTTTTATCAAAACAATAAAGTGTTTGTCTATTATTTGACCTTAATTGAAGTCATGAGTTCGATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU786532 lncRNA downstream 36769 26384583 ~ 26385726 (-) True G690801
TU786506 lncRNA downstream 61180 26361027 ~ 26361315 (-) True G690783
TU786503 lncRNA downstream 65943 26356322 ~ 26356552 (-) True G690780
TU786499 lncRNA downstream 69756 26352414 ~ 26352739 (-) True G690776
TU786418 lncRNA downstream 96060 26264914 ~ 26326435 (-) True G690705
TU786475 lncRNA upstream 2628 26428702 ~ 26430843 (-) False cenpw
TU786477 lncRNA upstream 2721 26428795 ~ 26430843 (-) False cenpw
TU786476 lncRNA upstream 2790 26428864 ~ 26430843 (-) False cenpw
TU786758 lncRNA upstream 289143 26715217 ~ 26715507 (-) True G691008
TU786760 lncRNA upstream 293570 26719644 ~ 26719843 (-) True G691010
XM_021612155.2 mRNA downstream 246856 26172446 ~ 26175639 (-) True LOC110529703
XM_036986843.1 mRNA downstream 300215 26120465 ~ 26122280 (-) True LOC110531082
XM_021612146.2 mRNA downstream 315694 26094941 ~ 26106801 (-) True LOC110529700
XM_036985177.1 mRNA downstream 327886 26087446 ~ 26094609 (-) True LOC110529220
LOC110529219 mRNA downstream 404713 26006882 ~ 26017782 (-) True LOC110529219
XM_021612162.2 mRNA upstream 2966 26429040 ~ 26430888 (-) False cenpw
XM_021612163.2 mRNA upstream 18043 26444117 ~ 26463156 (-) False LOC110529710
XM_021612164.2 mRNA upstream 18043 26444117 ~ 26463156 (-) False LOC110529710
XM_021612167.2 mRNA upstream 18043 26444117 ~ 26463156 (-) False LOC110529710
XM_021612166.2 mRNA upstream 18043 26444117 ~ 26463265 (-) False LOC110529710
TU785681 other downstream 431352 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 457002 25965179 ~ 25965493 (-) True G690033
TU785453 other downstream 617020 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other downstream 617020 25802030 ~ 25805475 (-) True LOC110529694
TU785403 other downstream 757830 25664165 ~ 25664665 (-) True G689810
TU786474 other upstream 3041 26429115 ~ 26430843 (-) True cenpw
TU787231 other upstream 438136 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 889494 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 1689662 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 2052743 28478817 ~ 28481898 (-) True si:dkey-85n7.8

Expression Profile