RNA id: TU786475



Basic Information


Item Value
RNA id TU786475
length 950
lncRNA type sense_over
GC content 0.41
exon number 3
gene id cenpw
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26428702 ~ 26430888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCAACGCGGGAGATTGAAAAACCTAAACAACGGTCACCGTGCTGAGGataactagctaatgttaataACTACAAGTTTGGCAATATGTTGAAAAAGGTGCCCAAGGCTACATTAAAGTCTCTAATGAGGAAGAAAGCCAACATTCGTATAGGCACAGCGGCAGATGTAATGGTTGAGCTGAACGTGCTGCTATTTCTGCATAGCCTCGCAGAAGAGGCGAGGACGAAAGCTTTTGAGGAGAAATCGGCTACTATCAAAGCACACCACGTCAAAGCAGTATCCAAGAAACTGCTGAAACGAGCCcgagggtgaagaggagaggcCGTTCTACATGAACATGATTCAACAACTGATTTTATTAATTGTCAGATTGGCCTGAATTATATATTGAACCTATATTTTTAATCTTTTCTGTGGTCTCTAGTTCTTGTCTGTATTCATTTGATCTGTTTTGTCTGTCATTTTGTATTTCCACAATGCACAGAGATTTTTAGAACATTTTTATATGCTGTCCAATTAAATGTTGTGTTCTGTAGATCTATCTCTGGTGTAGGCCTTGTTGTCCCTGTCATGTTCCATCAAGCTGActagaatgttttttttctgttaTACTAGCCTAGTTCCCTGTCAGAGAAATGCACTTATTTTGAGAGAAGTGACACAAAATACAGAGACTGGCGCCAAGGCTACCatcatccagctaacttgacacacctgtgggaagcattggagtcaacatgggccaacatccctgtgaaacgctttcgacacctttaTGTAGTCCGTGCCCCTGAATATTAggacggtgttcctaatgtttggtatactcggtGTACGATGCACTTTAGTACTCTGGCCAGTACAGTTGGTGTTCGATGCCAATAATGTTttcctttgtaaaaaaaaaaaaaacattaaaagaaGAAAGTTGCACACTGTGCAGTATGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU786532 lncRNA downstream 42976 26384583 ~ 26385726 (-) True G690801
TU786506 lncRNA downstream 67387 26361027 ~ 26361315 (-) True G690783
TU786503 lncRNA downstream 72150 26356322 ~ 26356552 (-) True G690780
TU786499 lncRNA downstream 75963 26352414 ~ 26352739 (-) True G690776
TU786418 lncRNA downstream 102267 26264914 ~ 26326435 (-) True G690705
TU786758 lncRNA upstream 284374 26715217 ~ 26715507 (-) True G691008
TU786760 lncRNA upstream 288801 26719644 ~ 26719843 (-) True G691010
TU786790 lncRNA upstream 327297 26758140 ~ 26766768 (-) True G691038
TU786806 lncRNA upstream 363566 26794409 ~ 26794617 (-) True G691054
TU786808 lncRNA upstream 363994 26794837 ~ 26795095 (-) True G691056
XM_021612161.2 mRNA downstream 2628 26422495 ~ 26426074 (-) True LOC110529708
XM_021612155.2 mRNA downstream 253063 26172446 ~ 26175639 (-) True LOC110529703
XM_036986843.1 mRNA downstream 306422 26120465 ~ 26122280 (-) True LOC110531082
XM_021612146.2 mRNA downstream 321901 26094941 ~ 26106801 (-) True LOC110529700
XM_036985177.1 mRNA downstream 334093 26087446 ~ 26094609 (-) True LOC110529220
XM_021612163.2 mRNA upstream 13274 26444117 ~ 26463156 (-) False LOC110529710
XM_021612164.2 mRNA upstream 13274 26444117 ~ 26463156 (-) False LOC110529710
XM_021612167.2 mRNA upstream 13274 26444117 ~ 26463156 (-) False LOC110529710
XM_021612166.2 mRNA upstream 13274 26444117 ~ 26463265 (-) False LOC110529710
XM_021612165.2 mRNA upstream 13274 26444117 ~ 26463361 (-) True LOC110529710
TU785681 other downstream 437559 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 463209 25965179 ~ 25965493 (-) True G690033
TU785453 other downstream 623227 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other downstream 623227 25802030 ~ 25805475 (-) True LOC110529694
TU785403 other downstream 764037 25664165 ~ 25664665 (-) True G689810
TU787231 other upstream 433367 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 884725 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 1684893 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 2047974 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU789291 other upstream 2162498 28593341 ~ 28594431 (-) True G693383

Expression Profile