RNA id: TU785681


Basic Information

Item Value
RNA id TU785681
length 466
RNA type TUCP
GC content 0.44
exon number 1
gene id G690073
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25990678 ~ 25991143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaccacaatgataccaaacagcacagtgactactttactctggtccatgttcagtgtggtgaccacaatgataccaaacagcacagtgactactttactctggtccatgttcagtgtggtgaccacaatgataccaaacagctcagtgactactttactctggtccatgttcagtgtggtgcacacaatgataccaaacagcacagtgactactttactctggtccatgttcagtgtggtgcacataatgataccaaacagcacagtgactactttactctggtccatgttcagtgtggtgcacacaatgataccaaacagcacagtgactactttactctggtccatgttcagtgtggttcacacaatgataccaaacagcacagtgactactttactctggtccatgttcagtgtggtgcacataatgataccaaacagcacagtgactactttactctggtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785655 lncRNA downstream 16894 25973539 ~ 25973784 (-) True G690047
TU785629 lncRNA downstream 34408 25955763 ~ 25956270 (-) True G690021
TU785617 lncRNA downstream 46733 25943736 ~ 25943945 (-) True G690009
TU785589 lncRNA downstream 69195 25920824 ~ 25921483 (-) True G689981
TU785574 lncRNA downstream 82370 25907992 ~ 25908308 (-) True G689966
TU785682 lncRNA upstream 583 25991726 ~ 25992018 (-) True G690074
TU785684 lncRNA upstream 1344 25992487 ~ 25992877 (-) True LOC110529697
TU785701 lncRNA upstream 9116 26000259 ~ 26000550 (-) True G690093
TU785704 lncRNA upstream 15978 26007121 ~ 26007345 (-) True G690096
TU785721 lncRNA upstream 28906 26020049 ~ 26020248 (-) True G690112
XM_036985175.1 mRNA downstream 117001 25854580 ~ 25873677 (-) True LOC110529696
XM_036985176.1 mRNA downstream 117022 25854580 ~ 25873656 (-) False LOC110529696
XM_021612140.2 mRNA downstream 185108 25801320 ~ 25805570 (-) False LOC110529694
XM_036985174.1 mRNA downstream 185245 25801320 ~ 25805433 (-) False LOC110529694
LOC110529218 mRNA downstream 190284 25796900 ~ 25800394 (-) True LOC110529218
XR_002474428.2 mRNA upstream 1281 25992424 ~ 25997066 (-) False LOC110529697
XR_005052847.1 mRNA upstream 1281 25992424 ~ 25998685 (-) False LOC110529697
LOC110529219 mRNA upstream 15739 26006882 ~ 26017782 (-) True LOC110529219
XM_036985177.1 mRNA upstream 96303 26087446 ~ 26094609 (-) True LOC110529220
XM_021612146.2 mRNA upstream 103798 26094941 ~ 26106801 (-) True LOC110529700
TU785641 other downstream 25185 25965179 ~ 25965493 (-) True G690033
TU785453 other downstream 185203 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other downstream 185203 25802030 ~ 25805475 (-) True LOC110529694
TU785403 other downstream 326013 25664165 ~ 25664665 (-) True G689810
TU785308 other downstream 469390 25517566 ~ 25521288 (-) False G689723
TU786474 other upstream 437972 26429115 ~ 26430843 (-) True cenpw
TU787231 other upstream 873067 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 1324425 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 2124593 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 2487674 28478817 ~ 28481898 (-) True si:dkey-85n7.8

Expression Profile