RNA id: XR_002474428.2


Basic Information

Item Value
RNA id XR_002474428.2
length 4113
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110529697
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25992424 ~ 25998685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagtggcggcaggttaGGGAGACATGATGAGAAGTAGAGGGCATGGATGTAACAAGTGCAGCATGTGATCTCCACTGGAGATATAGCCCCAGCCAGAGAGCGCCACAGACAAATCCCTCCCAAAATGTACCAAGAAGTGAaaactgtcacgtctgctcccgctccccctctctggcgctcgaggtcACCAGGCATCTcagcattacacacacctgtcacaaTTGTTAAGCGCACCTGCTCttcgtcagactcacctggactccatcatgtcattgattgcctcccctatatctgtcacttcctctGTTTCATTCCTGTGTCTGCATTGATGTTGTTatgtttctcctgtccagacgctggtCTTGTTTTGTTTCATTGCTATTAATTATTAAATACacaccctgtacttgcttcttgtCTTCCAGCTTCTGTTGTTACAGAATCGTTGCAGAAAGCATTGATTCAAGGTTTCCATCCAGAAAACACAGTCCCAAACCAGCTGGAGGACTGAGACCCGGCATTCCAGGAGATACCACCCAAAGTGGTAAAGGcttgtgtgtgggggtggggtggaggacaAACAAGCCATCAGAAGACCAGGATGCAGAAGAAGGACACGGCAAGCCACTCATACCAGAGATAACTGGCTCAGAGGAAGAGCCTTCAAGAACCGCACTGTGCTTTCTATCTTCTCATACTTATAAGAGAAAAATGGCATGATCATTAAGGCTACACTTTTACATGATCTCCATCAGAGATCCATTCCTATTACTGAAACATGGTATAGTACTTTAAGAGTTTTAAATGAAAATATGAGATAGTTACAAAACTGAAATGGTTGTTATATGGTAGGCCTAGTTTACATGTACATTCAAAAACCTTTCCATTAAAAGTAGATGTCTAAATGTGTGCTGTGTTAACACAGGTCAGGCAAGGTTTCCATAAAGGAGTCTTAAACACTCCCACTGGACACAcagtggttgaatcaacattgtttccacatcatttcaattaaattacgctgaaccaacgtggaatagacattgaactgacgtctgtgcccagtgggctgtgACTTCTGGGAGAGGATGAGGGCAGCCACCTGACAGACAGGAACAAGAGTCGAAAGAGGCCCTAGATGTGCTCCGGGAATGGAATCATCTTACATGGAAAGAGGGTGTGTTGTGTCGGACATTCCAGGACCTCAAAGAGGTAGAGATTGTCCAGCTGGTTGTCCCTACTGGTGGGAGACAGCTGGGAACTGTATCATGGGAGGGCAGGATACTGGGAGTCAGAAAAGGCCACAGCGCTAATCCATGCCAGATTCTATTGGCCAAACCTAGCCAGAGACATTCCAAATTGGTGTGCCACTTGTCAGCCTTGTGTCTTACGAAAGCCCCAGTTTGTCTGAAACAAGCACCTTCAGTGCCAATCAAAATGTCAGCCCCTCTTGAACTAATGTCTATAGACTACCTGAGCATAGGTCATCCAGAGACCCTCATCACAATGTGCTGGTAATGGTAGACCATTTCACTAAATATACTTGGGCCACCCCTACTAGGGACCAGACGGAGACTACTACTGCAAATGCACTGTGGCAGAAGGGAACGGCGGGTGTGAAAGATTTAATAGAATGATCATAGGTTTGCTGGGGACGCTTGGAGTGGAAAGACGGAAAGACGGCGCTGGCATTTCTTGCAGGTGCTGAGCCGGAAGCTGGAGATGGGTGCCATGGTGATGCAGAGAAACCACGAGCAGGAGATGGGTGCCATCGTGCCACGGAGAGACTGCAGGTGGGAGATGGGTGGCCATGGGACTCCAATCTGAAGATGGGGACCGCTGTGGCAGGGCTGAAAATGGCCAATGTAACCTTCATGAACCAAGAGATCTACAAGGACCACCAAGGGAGTTCACCCCATAAGAAACAGAGACTTAGGTTGGGTTATGTTATGGCCATTGGGGACACTGACCTTTCAGCGGGGAAGGATGTAACAGGGTTCTACAAACCTGCTCAACGTTATTACTCCTGTCACTAGTGTGGTTTGACTGAGCACATATTTTACTTCCTTCACTTGACTGTTTTCACATTTTGAATTATTTTCACGCTTGAGAATTCTGCACTTAACGATTGATTTTGCGCACGTCACCATAGTTTGCTGTGTTTCACGATTGATTTAAGGTGTGTACAGTGCTGAttacacccctccctctctttctctctctcttcccttcctacATAATGATCTCCAGTCAGTTCTCTGGTAACAATGTCTGACACCAGGTGTTTCTGTTAAGGTTGGTCCGCTATCCTTTTCCTCATGGTTGTGTGCCCTATTGTATAATTATTGGAATGCTGTCTGATATCGGGTGTATGTGGCAAGGTCTGTGCTGGGCCGCAACTGGATTGCTAGAAACCCTGAGCTGCCCGTGAGCTATCCACGCAACTGTTGATGCTACTGTAGATACTGCCGCTGAGCAGCTACTGAGCTACTAAATGAACTGAGCTCAACTGAATGTGCGCAGTACGTGAAGCAGACTACGGTGGGCCGCTCTGCTTAAACACCCCAACAGCAACGGAGGAACTGAACTAGCCTACTGGACTGCTGGCAATCCTTTTTAATCAATAACCTTTTTTTGTGACTCCCTTTCCTCTTCCCTTAGAATATTTAATCAATATTGTTGTTTTGAATAGAGCGAGGGTGTGGTTTCTCTTTGTCATCCGGGTGTCAATGCTCAAACCTGGTTTATTCTGAAAGTATTTGCGTCTAGTCTCGCCCCGATACACACCGTTCCTTATAGAAGCACCTGGTTTAGTGATTGTTGTGATCAGTGTCTAGGCAGCAGAATCCTCATAACATATTTCCAAGCTCTTTGATATATCTGGATGATGGTTGGTTCTTAAGTGGAGCTTGTACAGACGTGCTCAAATTTGTTAGTACCCATCCACAAAAAAACGAAGAATGCACAACTTTCTCTGAAATAACTTGAAACTGACAAAAGTAATTGGCATCCACCATTGTTTATTCCATATTTAATTGAAATCAGACCTTGATTTTTTTATTCAACATTATATTGTAAAGAACAAACAAATGAAAATGGCATGGGCAAAAATGATGGGACCCGTAACCTAATATTTTGTTGCACAACCTTTAGAGGCAATCACTGcaatcaaatgttttctgtagctCTCAATGAGACTTCTGCACCTGTTAACAGGTAGTTTGGCCCACTATTCCTGAGAAAACTGCTCCAGCTGTCTCAGGTTTGATGGGTGTCTTCTCCAGACTGCAAGTTTCAGCCCTTTCCATAGAGCTTTCTGACACTGGGCAGTACGTTTCACTCCAGAATGCCTTGATGGTCTTGATTTCATTGTGCCCTGCACAGATTCAAGGCACCCTGTGCCAGGCGCAGCCTCAAAACATAACCGAGCCGCCTCCATGTTTCactgtaggtatggtgttctttctttgaaagcttctttttttttgtctCTGAACACAGAGCTGATGTGACCtgccaaaaatatcaaattttgACTCATCTGTCCGAAGGACATTCTTCCAGAAAGATTGTGGCTTGTCAATATGCGTCTTAGCAAATTCCAGTCTGgctttgtttttctttcaaaagtaGTCCTCCTGGGTCTTCTTCCATGGAGCCCACTTTTGCTCAAAAAGCGACTGATGGTGCGTTCAGAAACTGACGTACCTTCACCCTGGAGTTCAGCTTGCATCTCTTTGGCAGTTATCCTTGGTTCTTTTTCTACCATTCACACTATCGTTCTGTTCAATCTGGGGTTGATTTTCCTCTTGCTGCCTTGCCCAGGGAGGTTGGCTACAGTTCCATGGACCTTAAACTTCTTAATAATATTTGTAACTGTTGTCACAGTAACATCAAGCTGCTTGGAGATGGTCTTGTAGCCTTTACCTTTACCATGCTTGTCTATTATTTTCTTTCTGATCTCCTCAGACAAATCTCTCCTTTGCtttctctggtccatgttcagtgtggtgcacacaatgataccaaacagcacagtgactactttactctggtccatgttcagtgtggtgaccacaatgataccaaacagcacagtgactactttactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785682 lncRNA downstream 406 25991726 ~ 25992018 (-) True G690074
TU785655 lncRNA downstream 18640 25973539 ~ 25973784 (-) True G690047
TU785629 lncRNA downstream 36154 25955763 ~ 25956270 (-) True G690021
TU785617 lncRNA downstream 48479 25943736 ~ 25943945 (-) True G690009
TU785589 lncRNA downstream 70941 25920824 ~ 25921483 (-) True G689981
TU785701 lncRNA upstream 3193 26000259 ~ 26000550 (-) True G690093
TU785704 lncRNA upstream 10055 26007121 ~ 26007345 (-) True G690096
TU785721 lncRNA upstream 22983 26020049 ~ 26020248 (-) True G690112
TU785724 lncRNA upstream 25516 26022582 ~ 26022784 (-) True G690115
TU785861 lncRNA upstream 38453 26035519 ~ 26035773 (-) True G690219
XM_036985175.1 mRNA downstream 118747 25854580 ~ 25873677 (-) True LOC110529696
XM_036985176.1 mRNA downstream 118768 25854580 ~ 25873656 (-) False LOC110529696
XM_021612140.2 mRNA downstream 186854 25801320 ~ 25805570 (-) False LOC110529694
XM_036985174.1 mRNA downstream 186991 25801320 ~ 25805433 (-) False LOC110529694
LOC110529218 mRNA downstream 192030 25796900 ~ 25800394 (-) True LOC110529218
LOC110529219 mRNA upstream 9816 26006882 ~ 26017782 (-) True LOC110529219
XM_036985177.1 mRNA upstream 90380 26087446 ~ 26094609 (-) True LOC110529220
XM_021612146.2 mRNA upstream 97875 26094941 ~ 26106801 (-) True LOC110529700
XM_036986843.1 mRNA upstream 123399 26120465 ~ 26122280 (-) True LOC110531082
XM_021612155.2 mRNA upstream 175380 26172446 ~ 26175639 (-) True LOC110529703
TU785681 other downstream 1281 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 26931 25965179 ~ 25965493 (-) True G690033
TU785453 other downstream 186949 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other downstream 186949 25802030 ~ 25805475 (-) True LOC110529694
TU785403 other downstream 327759 25664165 ~ 25664665 (-) True G689810
TU786474 other upstream 432049 26429115 ~ 26430843 (-) True cenpw
TU787231 other upstream 867144 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 1318502 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 2118670 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 2481751 28478817 ~ 28481898 (-) True si:dkey-85n7.8

Expression Profile