RNA id: XM_021612222.2


Basic Information

Item Value
RNA id XM_021612222.2
length 3212
RNA type mRNA
GC content 0.42
exon number 2
gene id tmem251
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28625412 ~ 28635685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATCTCATTTTCTAATATCCCTGGTCAGTCATATGACAAGGAAGAAAGGCAATCGGTGTTGTTGTTGGTTTATTAAATGGCCTGGGGTTATGAAATAATATGAACATGGATTTAAAATGAAATCACAGCAAGTTGCCTCGTCAACGAAACTGTTTGTCATGTAAAGAAAGGGAGGAGTATGGAGAATGATGAACTTCCGTCAGCGGATGGGATGGATCGGCGTGGGGCTGTACCTTCTGGCTAGCGTGGCTGTCGTCTACTATGTCTTTGAGATCGATCAGACATACAACCGTCTCACCCTGGAGCACGTGGAGCGGGTGGCTCAGGAACAGCGACCTCTGCCAGGGGACAACACGCCTCCCGCCGCATCCTCTGGGCCCCCATCCTCACTGCCCACCTGGACCCAGAGTCTCAAAACTCGCCTGCTCCTTTTGCCCTTCTGGGTGTGGGTCACCATCTTCCTCGTGCCCTACCTTCAGgtgttcctcttcctctactcGTGCACGCGCGCTGACCCCAAGACGGTGGGCTACTGCATCCTGCCCATATGCCTGGCGGTACTCTGCAACCGCCACCAGACCTTTGCCAAGGCGTCCAATCAGATCAGCCGGCTGCAGCTGATTGACACCTAAAGTGTCCAACCGATTTGAGAGGGTGGATAATATGAGAGGCGGGGAGAGCAGCCTTAGTGCATGCTGCACACAATCTTGGTGGAGGCCTACTACTGTCATACCTGAACTACAGGATACTTAACACTCACCTAGTGCACTGTGTGAAGTGTTAAGCCTGCCAGGCATCACTAGGCAATTCACTTGGGGGTTTCGTGGTGGTTTTGTTGATGTGTATGTATGCTGTTCTTGAGATGAACAATGGTACGCGTTTCACAACCCTTTGTATTTGTGATTTCTTACATTCAACAAAGGCTGGACCAAAGGGTGCCACATGCTCCAGGGTCTCACCACAGTACCTGACTATGATACAGACACTAATCTTTGAGGGTTTATCCGTTCACTGCAAGTTCCCACTTTTTTGAGCAAATAATTCTGAGGAAAGTTTGAGAGGCATATTGGTTCAATCATCATCCCAAAACTATTACCACCCCACTGACTCGAAGTACGGTGAAATATGACGTGTCAACTAATTTGTACAGACAGTTTTAGGAATGTGATgccattaaaaaaaaactgtcttaGTGGATCAGTAGTGATTCTTAGATAAGTACTGCAGTGTTTTTGTTATTGGTCTGaatgtattttgtagtgttaTTTACTGCTGTGTTGGCTCAGTAATTTCCTTCTACATAACATGCTTTTTTTTGTCATTCTATTACTTGCAATATTTAGGAATTGTTTTGGGGATTTGTCAATTGGTCAATGTATCCAGTATTTGTCTAAGATGAATATCTTGTGCCTTTTaggacccccccaccccccacgtAAAGTCAAAGAAAGTCCACAAAAAGCACATGGACCATGCTTTTGAAAATAACCGATCTTCTACTACAGCCATTGTTTGTCCTTGTGTGCCATAAAGTGACAAAAACGTGACATGACATTGTCAATGTTTTTGCCTTTTTTATGAGGATCCCTGGTCCCTTTTTTGTAAGACATGTATGTGGAAATGTGTTGTATGTTCAATGAGTTGTGGAATCCTTCACATGTAAGTTACGAGGAAAATGTTCACTGCCAACAAAGATAATTTCCTATCTTGAAATGAGCAATGGGACAAATATGGCTTTCCTATATGATCTTAAATCTGTCTTGGCTGTCTGTGCCACATTAATTTATATGGCAGGTAGTGTCCTTAAGCATTTCTGCAAAATACTCATTTAATTTGAACGTTGTTTTGAAATCATCTTTGGCTACTCTTTGTGTTGGAGGTCAACCTCCATATTTTTTATGTTTCCAATTGATTCGAGATGGTACTATTCTGATTAAGTTTTGATTTAATTTTCCATCTACATTAGCACAGTAATGAATGTGCAAAAGGTTTATTTGACCTTCCTCCCAACACAGGGAAGTGGCATGTGCTGTGTCGAGTGACCTGACCTAAAGGGAATTgggctgggttgtgttcagtaagGCACACAGAAAACATGTTGATACTCTTTGTAACAGAAAATACATTTGTCCAGGTAATCCTTCCATGCTTATCAGTTCTGTTTGTTtcttaatgaacacaaccctgattTTGTCCTTGACTATACAGCATGTCACTCATTGCACAGAGGCCCAAGTGTATGCGAGTTTGTGCTCTTCCCTTGTCCTTGATTAGTAagaaactcccctcacctggttgtctagggctaAATTGAAAGCAAAAAGCAAAAACCAACAGACTAGGCCCTCTATgtaatgagtttgacacccctactataaagcagggtttcccaaactttgTTCTGGGGTGCTTGTTTCTGGTTTTTGCCCTTGCACTACACAGCTGagtcaaataatcaaagcttgatgagttgGTGAATTCAATCATcggtgtagtgctagggcaaaaatgtgcactggggggggggggggggggggggctgctataAAGGATAATCTACTTGGGTTTTGGACTGGGTGTTCAGTGGCTCACATTACATTTTCACTGAACCCCGTTTCAACTTCATTCCTCTATTTTTACTATGTTGCACAACTTGGGTCCTCAGAAGTTGCAGTGTCTACAAAGGGTCACGTTCAGTAGGCATAAGATGGAAGAAGCATTTACAGATGGAGTTACTACCTGAACTCATAAGAATGctcattttttttcattttctccTACCGAAAGTACTATTGGTTTTAAGATACAACTGACTACAGTAACTGAAACCTCAAGCTAGCCAATAACCTGATTTGATCAGTAAGTGTCAAGGTCAAATCATACATTGTAGAAACTTCCCTACTCAACCAGAGTTGTCCACCCTTGATTCAACCTACACAAGTCCCAAATTATAGTTTGGACGTAGAGACACTGCCTGTCACGGTTCCTCTAGGTTTTTtctgtttgtttaaaaaaaaaaaaaaaaaaaagtgttaatggGTAAGGAATAGTCGtattagaaagaaaaaaaatatggGCTTGTTTGGTCTGTTTAAAAGAATGAGTGGCTATTCACGTTGGTGCTTCTGATTTTTATTGCCTTTCAAATCTAAATGCACTGTGATTAAAATAAGGTCTGGATTGTAAGAAAATTAAACGTTATGGGAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU788979 lncRNA downstream 159574 28465620 ~ 28465838 (-) True G693085
TU788813 lncRNA downstream 396598 28228421 ~ 28228814 (-) True G692926
TU788795 lncRNA downstream 428881 28196155 ~ 28196531 (-) True G692909
TU788761 lncRNA downstream 474320 28150777 ~ 28151092 (-) True G692879
TU788746 lncRNA downstream 500764 28124417 ~ 28124648 (-) True G692864
TU789299 lncRNA upstream 1282 28634023 ~ 28665934 (-) False G693390
TU789298 lncRNA upstream 1820 28634561 ~ 28635457 (-) True G693390
TU789383 lncRNA upstream 135010 28767751 ~ 28768156 (-) True G693468
TU789386 lncRNA upstream 137260 28770001 ~ 28770212 (-) True G693471
TU789405 lncRNA upstream 152368 28785109 ~ 28785516 (-) True G693488
XM_021612215.2 mRNA downstream 1224 28606271 ~ 28624188 (-) True ubr7
XM_036985232.1 mRNA downstream 2518 28606271 ~ 28622894 (-) False ubr7
XM_021612213.2 mRNA downstream 143468 28478817 ~ 28481944 (-) False si:dkey-85n7.8
XM_021612212.2 mRNA downstream 237108 28326936 ~ 28388304 (-) True prima1
XM_036985227.1 mRNA downstream 447738 28050702 ~ 28177674 (-) True ppp4r4
XM_021612225.2 mRNA upstream 72108 28704849 ~ 28727910 (-) False chga
XM_021612226.2 mRNA upstream 72108 28704849 ~ 28727911 (-) True chga
XM_021612228.2 mRNA upstream 104053 28736794 ~ 28766673 (-) True LOC110529748
XM_021611343.2 mRNA upstream 143696 28776437 ~ 28804357 (-) True si:dkey-177p2.18
XM_021612229.2 mRNA upstream 189962 28822703 ~ 28844826 (-) False LOC110529750
TU789291 other downstream 30981 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 143514 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 509364 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 1309477 27315568 ~ 27315935 (-) True G691747
TU787231 other downstream 1757334 26864210 ~ 26868078 (-) True G691447
TU789639 other upstream 325654 28958395 ~ 28958832 (-) True G693665
TU790962 other upstream 1369022 30001763 ~ 30062168 (-) False G694858
TU790963 other upstream 1405847 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 2214161 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 2222366 30855107 ~ 30855407 (-) True G696073

Expression Profile