RNA id: XM_036985475.1


Basic Information

Item Value
RNA id XM_036985475.1
length 2097
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110529916
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40958142 ~ 40969478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTAATATTAATTCACAGATAGTCGCATCTAAACAGCCCAGTGTTTTCTTTCCCACTTCACTTGCCTCCAAGCGAGTCCTGTGAGCCGGGTGACGTCATGCTGGCACACAGAAGTTGGGAGTAGAAAGCATGGAAAAGCTAAGTGGGTGAAGCAAGCGGAATTCTCCACCCTCCGCCTTTTCTGACACTTCTCGTAAATATTACAGTTAAGAAGAGCCTTGTTTTGTTGTTGGTTTAGACTGGACTCGCTGGGTAGTCCGTCTGTTCAGGAGCGCCGATCCGGCATTTTTCTAAACAACTTTGTGCGCGGTGTTGAGCTCCGAGCAACGGTGGAGCTGTTGCCACTCGCCGCTTGTAGACGGATCTCTATCCGGTTTTCGCGCTACTGGCCACACTGCCTGGACCTTGTGTGACTCAACGTCCAAGATTTGCAAATACTCCATAATCCATCTTGGTAACTAGAATTTGGTAATCCTTGGAAAATATCAAATTGGGCGACATTACAGAAATCGAATTGTTTTAAGGAAAACTGTAGGCTATATTTCATTTTTTGATATTCTTCAGCTGTTACTTTTGCACCGACAGTGGATTTTGATTGTTAAAATATAAAACAGTGTAGAACGACACTGTCCACGATGAGCAAAGCCACCTGTTCAACAAGTGGGTGTTTGGATATTCTGAATGTTAAATCAAGTCGTATCTTGGATATCCCGTGTAAAGTGTGTGGGGACCGGAGCTCTGGGAAACACTATGGCGTGTATGCGTGTGACGGCTGCTCTGGCTTCTTCAAGAGGAGCATCCGTAGAAACAGAACATACGTCTGTAAATCAGGCTGTCAGGGAGGATGCCCCGTGGACAAAACGCACAGAAACCAATGCCGAGCGTGCCGCTTGAAAAAGTGTCTCGAAGTGAACATGAATAAAGATGCCGTTCAGCACGAGAGGGGTCCCAGGACGTCCACCATACGCAAGCAGGTCGCCCTATATTTCCGGGGGCACAAAGAGGTGAACGGTTCATCGACCCACTTCCCGGGCTCGAGCCTACCGGGGCCGCCTTTGTTCACTACGGTCACACAACTGGAGCCACATAACTTGGAGATGAGCACAGTAGCCTGCACGCCGGAGAGGCAGGCCATCGTGGGACTGGCCCAGCCCACCCCGAAGTACCCTCACGAGGTCGGCGGCACACCCATGTATCTCTATGAGGTTGCTACTGAGTCGGTGTGTGAGTCAGCCGCGCGCCTGCTGTTCATGAGCATCAAGTGGGCCAAGAGCGTGCCCGCCTTCTCCACGCTCCCCTTACCTGACCAGCTAATCCTCCTGGAGGAAGCCTGGAGAGAACTGTTTGTTCTGGGCATAGCGCAGTGGGCCATTCCGGTGGACTCCAAAACCCTGCTCGCTGTTTCCGGTATGaatacagacaacacagagtcCCAGCGGATGAATAAAATAATCTCCGAAATACAAACCCTGCAAGAGGTCGTTACCTGGTTCAGACAGCTGCGCCTGGACGCAACTGAGTTCGCCTGTTTGAAGTGCATCGTCACGTTTAAAGCTGTGCCAACGCATGACGGGTCGGAGTTGAGGAGTTTCCGCAACGCCAGTGCCATTGCTGCACTCCAGGATGAGGCACAGCTCACCCTAAACAGTTACATACACACCAGATATCCAACTCAGCCCTGCCGCTTTGGGAAGCTGCTCCTACTTCTACCAGCTCTGCGGTCAGTCAGCCCATCCACCATAGAAGAAGTATTTTTCAAGAAGACCATTGGGAACGTGCCCATCACAAGGCTCCTCGCTGACATGTACAAATCAAGCGATATATGAGTTTATTTCCGCCATATCAACATTACGCTCACTAGCCAAGAGTGTCTGTTAAGGCTCATAGACACAAACATTCTAATGAGCACGTGACAAATTGAACTTGAAGAACATAAAAACCTTGATTTTACCAATCTTTGGGTTAGGCTTACGTTTTgaggatgtatactgaacagaaatataaacagaacatgtaaagcattggtcccatgtttcatgagctgaaataaaagaccccagatTTTTTCCTTACgctcaaaaagcttatttctctcaa

Function

GO: NA

KEGG:

id description
K08545 NR2E1, TLX, tll; nuclear receptor subfamily 2 group E member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805254 lncRNA downstream 662 40956893 ~ 40957480 (-) True G708169
TU805236 lncRNA downstream 47153 40875216 ~ 40910989 (-) True G708154
TU804965 lncRNA downstream 113623 40844292 ~ 40844519 (-) True G707917
TU804955 lncRNA downstream 122011 40835899 ~ 40836131 (-) True G707907
TU804953 lncRNA downstream 125804 40831967 ~ 40832338 (-) True G707905
TU805299 lncRNA upstream 65 40969543 ~ 40969774 (-) True G708214
TU805322 lncRNA upstream 57123 41026601 ~ 41039666 (-) True G708229
TU805459 lncRNA upstream 272063 41241541 ~ 41241912 (-) True G708363
TU805468 lncRNA upstream 282383 41251861 ~ 41252065 (-) True G708372
TU805478 lncRNA upstream 297553 41267031 ~ 41267294 (-) True G708382
XR_005052876.1 mRNA downstream 158105 40779851 ~ 40800037 (-) False LOC118965517
XR_005052877.1 mRNA downstream 158105 40779851 ~ 40800037 (-) False LOC118965517
XR_005052878.1 mRNA downstream 158105 40779851 ~ 40800037 (-) True LOC118965517
XM_021612572.2 mRNA downstream 178511 40724397 ~ 40779631 (-) True LOC110529912
XM_036985471.1 mRNA downstream 288641 40638271 ~ 40669501 (-) True armc2
XR_005053021.1 mRNA upstream 756043 41725521 ~ 41728987 (-) False LOC118965611
XM_036985477.1 mRNA upstream 1371204 42340682 ~ 42420086 (-) False klhl18
XM_036985478.1 mRNA upstream 1371204 42340682 ~ 42420087 (-) False klhl18
XM_036985479.1 mRNA upstream 1371204 42340682 ~ 42420087 (-) True klhl18
XM_021612584.2 mRNA upstream 1462313 42431791 ~ 42525669 (-) False puf60a
TU804129 other downstream 998529 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 1731829 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 2644339 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 2919796 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 3465985 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 1750293 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 2201282 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 3569315 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 4488299 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 5341652 46311130 ~ 46325681 (-) True crfb16

Expression Profile