RNA id: XM_036985477.1


Basic Information

Item Value
RNA id XM_036985477.1
length 4300
RNA type mRNA
GC content 0.43
exon number 10
gene id klhl18
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 42340682 ~ 42420087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGATTGGAGAATATTCCTACTACGGTGTCTCGAGTCGGTCAGTTCCCCATTGTTAGGCGTTTTCATTATTTCCCTTTGCCTCAATGACGATGGGTGATATGATATATGAAGAACTGGAGGATTTGATGCATTTTTCAGTCCACGATTTACCAGGTCGTGGATATGCTGTTATGGAGGAGATCAGAAGGCAAGGGAAACTCTGCGATGTCACCCTGAAGGTTGGAGACCACAAGTTCAGTGCCCACAGGATTGTTCTGGCTGCCTCCATCCCTTACTTCCATGCCATGTTTACGAATGACATGGTAGAGTGCAAGCAAGATGAGATTGTAATGCAAGGGATGGACCCTAGTGCACTTGAAACTTTGATCAATTTTGCGTATAATGGCCATGTGGCCATCGACCAGCAGAACGTCCAGTCCCTGCTGATTGGAGCCAGCTTTTTGCAGCTGCAGAATGTCAAGGATGCCTGCTGCTCCTTCCTCCAGGAAAGACTTCACCCTAAGAACTGTCTGGGTGTGCGACAGTTTGCAGAGACCATGATGTGCACAGCACTGTACGACGCGGCCAACAGTTTTGTCCACCAGCACTTTGTGGAGGTGTCCGTGTCTGAGGAGTTCCTCAGTCTCAGGCCAGAGGAAGTACTGGAGCTGGTGGGTTGTGACGAACTCAACATCAAAGCGGAGGAGCAGGTGTTTGAAGCAGTCCTTGCGTGGGTGCGGCATGAACGTGAGGAGCGGGAACCTTCGCTCCCTGAGTTACTCTCCAAGACCCGTCTGCCCCTTTGTCGACCCCAGTTCTTGGCAGACCGCGTTCAACAGGATGAACTGGTGCGCTTTTGCCACAAATGCAGGGATCTTGTTGATGAAGCGAAGGATTTCCACCTCATGCCAGAGCGCCGTCCTCACCTGCCCGCTTTTAAGACTCGACAAAGATGCTGTACTTCAATCGCAGGGCTAATATATGCAGTCGGTGGACTAAATAGTGCAGgTGACTCATTGACTGTAGTTGAAGTATTTGACCCAATTGGAAATTGCTGGGAACGCTGTCAGCCAATGAGTACAGCTCGAAGTCGAGTGGGTGTGGCAGTTGTCAATGGGTTACTTTACGCAATCGGTGGATATGATGGACAATCACGGCTAAGCACAGTGGAGGTCTATAACCCAGAAACGGATACTTGGACATGTGTTGCTAGCATGAACAGTCAACGAAGTGCAATGGGAACAGTGGTGGTTGACGGACATATCTATGTGTGCGGGGGCTATGATGGCAAATCCTCACTCAACTCAGTAGAGTGCTACTCTCCAGAAGCCAACAGGTGGACAGTAATGACAGAGATGAGTGCAAGTCGCAGTGCAGCTGGGGTGACTGTTTTTGATGGAAGGATTTTTGTATCTGGTGGTCATGACGGTTTACAGATCTTCAATACGGTGGAGTACTACAACCAGCACACAGCTCTTTGGCACCCCGTTGCTGGCATGATGAACAAGCGCTGTCGTCACGGCGCTGCAGCCCTTGGCAGCCAGCTCTATGTGGCGGGGGGTTATGATGGTTCCGGGTTCCTCAGCGGGGCCGAGGTGTACAGCTCAGTGGCAGACCAATGGAGCCACCTGGTGGCCATGAACACACGGCGCAGCAGAGTCTCACTGGTGGCAAACTGTGGCAGGCTTTACTCCGTGGGTGGCTATGACGGACAATCCAACCTGAGCTCTGTAGAGATGTACGACGCTGAGACCAACCGCTGGACATTCATGGCACCCATGGTGTGCCACGAGGGTGGGGTGGGTGTTGGTTGTATACCCCTTCAGCCTGCTTAACCCCTACCATCCCCAAAAGCCCAAAGACTTTTAGATTTTTgtcaattattttttaaatcaattaacAAGAAAAAGGTATAAATGTATGTTTCTGTATACCAGGTACCACAGTTCAAACCATTAAGTCTGGTTTAGCCATTGTACCATTGAAAGGTTTATAATGAGAATGTTCATAGGGCATTAGTACATGAGTAAATAAATATATGTTGGGATTCAGTTGCGTAGTTTGTAGGGATACAGAGGCTGGGGTTTTGGGATGGCCGGAGGTAACTGACCATTAGGCTCTAAGCTCCTATTTGGCAGGAGCGACAATAAATTAACTTGCAGTGAACACGTAGATTAAGAGAGCGATGAATGAATAGCAGGACAAGTGTGGACTTGTATCGTATGATATGTGCATCAGAATTTACAACCTTGAAGTGATACTTCATACCAGAATCTGTCCCGAATGTTACTATCACTATCAATGTCTGCACCATTGTACTGAGGATTGAGTTGCACTATCTGATCTGGAAGCCTTGTCATGGTTTCAGGTTTCACAATGTTGGTGAATTTCTTTGTGTTTTGGGAAAATAGGTATTATTTTGATTGGGATCATTTGCTTATGAATATTATTATAAAGTAACTGACCACCATAACTCCTTGCCCTTTGATTGTGGGAACTGTTTTCCCAACAAGGATCTTAGCAAAAGGGAACTGAAGAACTGTCTTTCGGTTGATTGCATTACGATGCCACAACACCAAGTTGTATAGCAACTTGATAACCCTTCAAATTGTTTAAACAAAATGAACAACACCTCATGTGCGTTCAACAGAGGAAATAGTTTGCTAACGTATTCCATTTGTCTTCTGTTAGCTGCGAAAATTCGCTAACAGTGTGCTGCGAACGTAAAATATCTGTTTCGGGTGTAAACTGCCACCACCTAGGCTTTCTATTACATGTAGTAGGAATAGGAAAGTCATTTTCAGTTTGATTCTCATTGCTAAACTGTCATGGTAATCCTTGCAAACATTTAGCTTTTTAATGTTTCACCATAACTTTCATTCAAAATCATTCAACTGAAATTGTTACTAAGTAACATGTTCATCACAAACAGAACCCTTGTTGAACGCACCTCTGCTCAAAGTGCAATTTCATCTTTTATTATAAAATAGTATGGGAGAACTTAAGTGGCTAAAATATGAAGTGTGCTTTGAAGAGTGCATAGCGACGATGTAGCTGCAAATGTTATGCTTTATTACCCAAAATATTGAATATGTCAAAAGCAGACTGTGTGCAGCACATTTAGGGAGCATTCCAGTAACATTCTGATTATTTTTTTTGCATCTGCCACTGGTAACGTTGTGTGGGAGCTTGCCATTCCCTTGGAACAACAGTGGCAAACTATTTTAAGAATGAGGTATTGTGTAATGTAATTGAAAATGGATTGTACAGTGAGATGTAGTATTGCTTTATAGACTTGTTTGTCAGACTTTATCTGCTGCATTGTCACGATTTAAATAACTTTCATTTGGGATTAATTACTGTGAACTGTTGATGTTTAGCTTATTTCTGCTGATGTTCTGgtaatatattacacacacattttatatatatatatatttttttttttgcattattatgTTTGCAGTATTCTTACTGCTCTTCACTTGGTACTGTCTGGTCCCAGGCTACAAATTGTATTTATTAGTGCattcttttgttgttgtttcttgaTTCTTAACTTTACGATTAGTACTACTATCACAAATATGTAAGCTTGAAGGGATAGTGATTTTTTTAATGACTTCCCTAGGGTGTTCTTTCCTCCAAACTGTTTATGAATTTGTTAGCAGTTCATTTAGCAACGTCAAGAATAATCTGACTAGCATTTTGGGAGAATGTAGGATTCCATCCGTTAGTAGGGCATTCAAAACCATTACAATTGGTGCAAGTTgagttgcagacattttttttatataaacagGGACATCCCATTGAGACCATGGCCTCTTTATAAGGGAGCACTGCACACAATCATATAAATTCCCAATATTTACAATTGCAACGCAATAAAAACATACCAAATTTACAAGTAACTTACAAAACACGATCAtggaaaaacaaacacattcctcagtaaaaaggtAAATCAACCAGTCGTCTGAACTGCTCTAGTGGCACCAAAACATCCAACCTTAGAGAGTTCTGGAGATCATTCCACAAGTAAGGTGCAAATAAACTAAATGCAGATCTACCTAACTTAGTGGACACTGAAGGGCTCTCCAGAGTTAGCCATATCTGAGACCGGGTCTGGTAGCTCGTACATCTTTAGGTTACGTTGAAGTAAGGTATGGCGGATGTTTGTGTAAGAGAGCTTTATAAACAAAAATATTGCAATGCGTTGATCTGAGTATTCAAAGAGGGCCAGCTTACTTTCTGATACAGAAAGCAGTGATATGTAGGAAACCTGTCATCTGTAAATAAAGCGCAGTGCGCTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU806114 lncRNA downstream 14052 42326342 ~ 42326630 (-) True G708852
TU806086 lncRNA downstream 30037 42246963 ~ 42310645 (-) False G708827
TU806087 lncRNA downstream 30037 42253104 ~ 42310645 (-) False G708827
TU806088 lncRNA downstream 30037 42254573 ~ 42310645 (-) True G708827
TU805959 lncRNA downstream 49597 42179267 ~ 42291085 (-) False G708736
TU806377 lncRNA upstream 9332 42429418 ~ 42430176 (-) True G709096
TU806496 lncRNA upstream 160189 42580275 ~ 42627363 (-) True G709197
TU806565 lncRNA upstream 291457 42711543 ~ 42711868 (-) True G709263
TU806593 lncRNA upstream 310812 42730898 ~ 42741496 (-) True G709282
TU806644 lncRNA upstream 635532 43055618 ~ 43060881 (-) True G709322
XR_005053021.1 mRNA downstream 611695 41725521 ~ 41728987 (-) False LOC118965611
XM_036985475.1 mRNA downstream 1371204 40958142 ~ 40969478 (-) True LOC110529916
XM_021612576.2 mRNA downstream 1371208 40958142 ~ 40969474 (-) False LOC110529916
XR_005052876.1 mRNA downstream 1540645 40779851 ~ 40800037 (-) False LOC118965517
XM_021612584.2 mRNA upstream 11705 42431791 ~ 42525669 (-) False puf60a
XM_021612585.2 mRNA upstream 11705 42431791 ~ 42526527 (-) False puf60a
XM_021612583.2 mRNA upstream 11705 42431791 ~ 42526586 (-) True puf60a
XM_021612591.2 mRNA upstream 1179668 43599754 ~ 43602305 (-) False mycb
XM_021612593.2 mRNA upstream 1179668 43599754 ~ 43602305 (-) True mycb
TU804129 other downstream 2381069 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 3114369 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 4026879 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 4302336 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 4848525 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 299685 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 750674 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 2118707 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 3037691 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 3891044 46311130 ~ 46325681 (-) True crfb16

Expression Profile