RNA id: TU806565


Basic Information

Item Value
RNA id TU806565
length 326
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G709263
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 42711543 ~ 42711868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagcctgtacagaatacaaatattccaaaacatgcatcctgtttgcaataaggcactaaagtaaagctgcagaaaatgtgtcaaagaaatgtcctgaatacaaagtgttgtgtttggggcaaatccaacacatcactgaataccactcttcatattttcaagcatggtggtggctacatcatgttatacactggaattgtttaccaagatgacattgaatgtaacctgagtggctgagttacagttttgacttaaattgtcttgaaaatctatggcaagaagtgaaaatggctgtctagtaatgatcaTTATGCACTGTCCATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU806496 lncRNA downstream 84180 42580275 ~ 42627363 (-) True G709197
TU806377 lncRNA downstream 281367 42429418 ~ 42430176 (-) True G709096
TU806114 lncRNA downstream 384913 42326342 ~ 42326630 (-) True G708852
TU806088 lncRNA downstream 400898 42254573 ~ 42310645 (-) True G708827
TU806593 lncRNA upstream 19030 42730898 ~ 42741496 (-) True G709282
TU806644 lncRNA upstream 343750 43055618 ~ 43060881 (-) True G709322
TU806653 lncRNA upstream 358567 43070435 ~ 43070702 (-) True G709329
TU806654 lncRNA upstream 358858 43070726 ~ 43070940 (-) True G709330
TU806669 lncRNA upstream 369323 43081191 ~ 43081480 (-) True G709345
XM_021612583.2 mRNA downstream 184957 42431791 ~ 42526586 (-) True puf60a
XM_021612585.2 mRNA downstream 185016 42431791 ~ 42526527 (-) False puf60a
XM_021612584.2 mRNA downstream 185874 42431791 ~ 42525669 (-) False puf60a
XM_036985478.1 mRNA downstream 291456 42340682 ~ 42420087 (-) False klhl18
XM_021612591.2 mRNA upstream 887886 43599754 ~ 43602305 (-) False mycb
XM_021612593.2 mRNA upstream 887886 43599754 ~ 43602305 (-) True mycb
XR_005053023.1 mRNA upstream 1047461 43759329 ~ 43763318 (-) True LOC118965613
XM_021612600.2 mRNA upstream 1473125 44184993 ~ 44436559 (-) False efr3a
XM_021612601.2 mRNA upstream 1473125 44184993 ~ 44436559 (-) False efr3a
TU804129 other downstream 2751930 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 3485230 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 4397740 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 4673197 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 5219386 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 7903 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 458892 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 1826925 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 2745909 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 3599262 46311130 ~ 46325681 (-) True crfb16

Expression Profile