RNA id: XM_021612584.2


Basic Information

Item Value
RNA id XM_021612584.2
length 2187
RNA type mRNA
GC content 0.53
exon number 12
gene id puf60a
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 42431791 ~ 42526586 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTGATGTTAGTATCACGTTTATAGTCATAACGAGCTCAAAATTCCATTGCTTGAAACGGATCAGTAACTTAGCTGTCATTTTCAGACCACTGTGGCTAGGAAATAAAATCGGCCGCTCCTCCCGGAGGCGAGGCTCTGATGATGGAGAATGGACAGAGCACCGCCTCAAAGCTCGGCCTGCCGCCTCTCACCCCTGAGCAGCAGGAGGCACTGCAGAAGGCGAAGAAGTATGCCATGGAGCAAAGCATTAAAAGTGTGCTTGTCAAACAGACCCTGGCTCATCAACAACAGCAGCTCACCAACTTACAGATGGCATCGCTGACAATGGGCTTTGGCGATCCCCTCTCACCTTTACAATCGGTAGCGGCTCAGAGACAGCGAGCATTAGCCATCATGTGCCGAGTGTACGTGGGCTCCATTTACTACGAGCTGGGAGAGGACACGGTCCGGCAGGCCTTTGCCCCGTTCGGCCCCATCAAGAGCATCGACATGTCCTGGGACTCTGTTACAATGAAACACAAGGGTTTTGCGTTTGTGGAGTATGAGGTGCCTGAGGCAGCCCAGCTATCCCTTGAGCAGATGAACTCCGTTATGCTGGGAGGGAGAAACATTAAGGTGGGACGACCGAGCAACATCGGACAGGCCCAGCCGATCATTGACCAGCTGGCAGAAGAGGCACGCGCCTTCAACCGAATCTACGTGGCGTCTGTGCACCCCGACCTCTCGGACGAGGACATCAAGAGTGTGTTTGAGGCGTTCGGCCGGATCAAGTCATGCACTCTAGCGAGAGACCCCACTACAGGGAAACACAAGAGCTACGGCTTTATTGAGTACGACAAGGCTCAGTCCTCCCAGGATGCAGTTTCCTCCATGAATCTCTTTGACCTAGGGGGTCAATACCTGCGTGTGGGCAAAGCGGTCACCCCCCCCATGCCCCTGCTCACTCCGACCACACCTGGCGGACTCCCCCCTGCTGCAGCTGTGGCGGCTGCAGCTGCCACAGCCAAAATCACTGCCCAGGAGACGGTTGGGTCATCGGTGCTGGGAGCGCTGGCTGGACCCGCCCTCCTCTCTCAACAGTTGGGTGGCCTGCCCCAAGCCGTCATGGCAGCCCAGGCCCCGGGGGTCATCACAGGGGTAACCCCAGTGCGGCCCACTTTGCCTGTGCTACCTCAGGTGGGCCTGGTCAACCCAGTGCTGGCCTTACCACCGGTGCTGGTCACCTCTCTGGTGGCAGCCCAGGAGGCCAAGAAGAAGGAATTGGAGGAGGAGGCCGTGCAGGACGGGACGGGCCAGGAGCCGCTGAGTGAGCAGGAGCACATGAGCATCTCCGGGAGCAGCGCCAGACACATGGTCATGCAGAAGTTGCTCCGTAAGCAAGAGGTGAGGTTGTCTTCTCatctagtgttgatgttgagAGTTTCAAACCATTTCAACGTGTGGATCACGGCCTCACGTCTTCTGTCGACGGTGATGGTGCTGCGGAACATGGTAGGACCAGAGGACATCGACGATGACCTGGAGGGTGAGGTGACTGAGGAGTGCGGCAAGTTTGGTGCTGTCAACCGTGTCATCATCTACCAGGAAAAGCAGGGCGAGGAGGATGATGCGGAGGTCATTGTCAAGATCTTTGTGGAGTTCTCCATGGCGGCAGAGATGAACAAGGCCATCCAGGCACTCAATAATCGCTGGTTTGGAGGTCGCAAGGTCATTGCTGAGGTGTACGACCAGGAGCGCTTTGACAACAGCGACTTATCTGCATAAGACGTTCTGACCTTTCTGAAAGATCTCTACTACGACCACAACCTctggtgtttctctctccctcacacacatacacacacacacttacacagacaAGGCTGCCACGCACCACTGTAGGTGATGCTGGGCTCTTTTtaaccagttttttttttatttttatcaatgttgatattaatattattaatGCTCCTGTTTGGGGACACCGACAAAGCAAGGAGACGCTAAGggattttttaattattattgtGGCCTACTGTGAAGGGCTGGATATTTGTTTCTGTATTGTTTTCAGTTTCATTTCCCTGATTTTAGTTTTATTTCGGTTACACCTTTTTTGATTAAGTCAATTCTACAAAGGTTCTCTTGTTATATAGCTCTTGGTGTTAATTGCCCAAAACAATAAATTCCTCATGAATTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU806377 lncRNA downstream 1615 42429418 ~ 42430176 (-) True G709096
TU806114 lncRNA downstream 105161 42326342 ~ 42326630 (-) True G708852
TU806087 lncRNA downstream 121146 42253104 ~ 42310645 (-) False G708827
TU806496 lncRNA upstream 54606 42580275 ~ 42627363 (-) True G709197
TU806565 lncRNA upstream 185874 42711543 ~ 42711868 (-) True G709263
TU806593 lncRNA upstream 205229 42730898 ~ 42741496 (-) True G709282
TU806644 lncRNA upstream 529949 43055618 ~ 43060881 (-) True G709322
TU806653 lncRNA upstream 544766 43070435 ~ 43070702 (-) True G709329
XM_036985478.1 mRNA downstream 11704 42340682 ~ 42420087 (-) False klhl18
XM_036985479.1 mRNA downstream 11704 42340682 ~ 42420087 (-) True klhl18
XM_036985477.1 mRNA downstream 11705 42340682 ~ 42420086 (-) False klhl18
XR_005053021.1 mRNA downstream 702804 41725521 ~ 41728987 (-) False LOC118965611
XM_036985475.1 mRNA downstream 1462313 40958142 ~ 40969478 (-) True LOC110529916
XM_021612591.2 mRNA upstream 1074085 43599754 ~ 43602305 (-) False mycb
XM_021612593.2 mRNA upstream 1074085 43599754 ~ 43602305 (-) True mycb
XR_005053023.1 mRNA upstream 1233660 43759329 ~ 43763318 (-) True LOC118965613
XM_021612600.2 mRNA upstream 1659324 44184993 ~ 44436559 (-) False efr3a
XM_021612601.2 mRNA upstream 1659324 44184993 ~ 44436559 (-) False efr3a
TU804129 other downstream 2472178 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 3205478 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 4117988 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 4393445 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 4939634 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 194102 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 645091 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 2013124 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 2932108 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 3785461 46311130 ~ 46325681 (-) True crfb16

Expression Profile