RNA id: TU811888


Basic Information

Item Value
RNA id TU811888
length 1290
RNA type TUCP
GC content 0.44
exon number 10
gene id LOC110529973
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47051073 ~ 47067973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATTTTGGGAACAGTGTCAGTTTCTACTGCTATCAAGTGCCGCTCTATGCATAGCCTACTGCTTCATAGTGGTCGAGCACGGAGCAAACCGATAACCTATTTGGACCGGCACTGTTCAGAATCTGTGTAAAGTTTCTGACTCTCCGCGCGTTGATCTTTTTCTATTTGTTGAGAATTTCGCCACTGCCATTGAACAGCATTTGTAGCTCGTTCCAAGATGGCCGCTTGGGTTGCATTCATTTTTTTCTGATCGACTTGTAACTTTCATTGTCCATCACATACGGGATATAACCCGTTAGGATTTTACAATTTTAGGACAATGCACAGAACAACAAAAATCAAGATTACTGAGCTGAATCCACATTTGATGTGTGTCTTGTGCGGTGGATATTTTATCGACGCAACCACCATTGTGGAGTGTTTACACTCATTCTGTAAAATGTGCATTGTTTGTTATCTGGAGACCAGCAAATTCTGTCCAATTTGTGATGTCCAGATTCACAAAACGAAACCCCTTTTGAATATTAGgtcTGACAAGACCCTTCAAGACATTGTTTACAGGTTGGTACCTGGGCTTTTCAAAGATGAAATGAAACGAAGGAGGGATTTCTATGTTGCACATCCTTCTCTTGATGctggaaatggaTCAAATGAAGAGCGAGGGGAGGTGGCAGATGAAGAAAAGAGAATAATAGCCGACAATGAGATTATAAGCCTGTCCATTGAATTTTTTCATCAGAGCAAGCTGGGAAATGAGGATGGTGAAGTCAAGGATACGAAGACAGAGATGATTGACAAGCGATACTTGCAATGTCCAGCAGCCATGACCATAATGCATCTGAGGAAATTCCTTCGAAGTAAAATGGATATTCCATGCACCTATCAGATAGAAGTTATGTATGAAGATGAACCATTGACGGATTACTACACATTAATGGACATTGCACACATCTACACCTGGAGAAGGAATGGTCCCTTGCCATTGAAATACCGGGTACGAACAGGCTGCAAGAAGATGAAGATGAGCAGCCCAAGAAACGGGGCCAAAACCACACAACATGCTGGAGGAGTATGCTATGACTCTGGGACTGGGGGTGACAAGCATCTGAACAATGACCCCGAAGCTccctccacctcatcctcctctctgcccaGTCCGAGCCACAGAATTGTccactcatcatcatcatcgcttACCCACTTCCCCCACCTCTCCAGCATTGGCACCTCAACAAACGGTATCTTAACAAAAGCGGGTCCAAATCAACTTTCCCGGACATTCACGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU811892 lncRNA downstream 5971 47044762 ~ 47045496 (-) True G714279
TU811893 lncRNA downstream 6112 47044704 ~ 47045355 (-) False G714279
TU811886 lncRNA downstream 15150 47036027 ~ 47036317 (-) True G714276
TU811880 lncRNA downstream 35656 47015599 ~ 47015811 (-) True G714271
TU811871 lncRNA downstream 41198 47003967 ~ 47010269 (-) True G714262
TU811904 lncRNA upstream 11916 47069576 ~ 47069788 (-) True G714290
TU811910 lncRNA upstream 18200 47075860 ~ 47076089 (-) True G714296
TU811912 lncRNA upstream 20101 47077761 ~ 47077967 (-) True G714298
TU811914 lncRNA upstream 21438 47079098 ~ 47079448 (-) True G714300
TU811932 lncRNA upstream 31855 47089515 ~ 47089752 (-) True G714318
XM_021612670.2 mRNA downstream 16105 47027194 ~ 47035362 (-) True dnajc1
XM_021612671.2 mRNA downstream 24392 47015885 ~ 47027075 (-) False nebl
XR_002474465.2 mRNA downstream 24392 47017536 ~ 47027075 (-) True nebl
XM_036985505.1 mRNA downstream 248298 46651828 ~ 46803169 (-) True pex5lb
XM_021612661.2 mRNA downstream 248299 46651828 ~ 46803168 (-) False pex5lb
XM_021612689.2 mRNA upstream 172427 47230087 ~ 47260839 (-) False LOC110529976
XM_021612686.2 mRNA upstream 172427 47230087 ~ 47260840 (-) False LOC110529976
XM_021612688.2 mRNA upstream 172427 47230087 ~ 47260840 (-) False LOC110529976
XM_021612685.2 mRNA upstream 172427 47230087 ~ 47260844 (-) False LOC110529976
XM_021612687.2 mRNA upstream 172427 47230087 ~ 47260844 (-) False LOC110529976
TU811283 other downstream 725786 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1593219 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2511963 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3880385 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 4330768 42719771 ~ 42720699 (-) True G709272
TU812043 other upstream 120764 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1231282 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1484631 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1702252 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1724461 48782121 ~ 48782515 (-) True G716480

Expression Profile