RNA id: TU819478


Basic Information

Item Value
RNA id TU819478
length 1456
lncRNA type sense_over
GC content 0.42
exon number 5
gene id selenof
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 52793317 ~ 52818726 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAATGTCTGGGGAGGTGTATCTCCTGTGGCTTCTTTCTCTCATACAAACGCTGTCGGCATATGGAGCCAACTTGTCCTCAGAGTCATGCAGAGAGCTGGGCTTTTCCAGCAACCTCCTGTGCAGCTCCTGTGACCTGCTGGGGGAGTTCAGCCTGAGCTCGATCCAGCCTGTCTGCAAACAGTGCTGCCAGCAGGAGGTCCATATGGAGTCCAGGAAGCTCTACCCTGGGGCCATCCTGGAAGTGTGTGGATGAAAATTGGGGAGGTTCCCTCAAGTCCAAGCTTTTGTCAGGTCTGACAAGCCGAAGATGTTCAAGGGTCTTCAAATTAAGTATGTGAGAGGCGCAGACCCTATACTAAAGCTGCTGGACGATAACGGGAACATTGCTGAAGAACTCAGCATCCTCAAGTGGAACACGGATAGTGTGGAAGAATTCCTGAGCGAGAAGTTGGAAGTATATAATACCGATTTGTAGTACTCATCACCATTTTCTTTTGTGCACTGTTTTTGGATTTTATTGTTTAAAGGTACTGCActattgtattattttattttttttgtagtaCCTGAAAATCATGAACTTCGTCCGTAGATTTTGTGAACTGACATTATGTGCCAGGATGTTAAACGGCTGTTTTATAGATTTGTAAAGTACCTGAACTTACCTGCAAAATACCTGGCATTAACGTCAAAATTATTGGAATGAAGTAGCCAAAGAAAGACTAAAGATGTACACTGCTTGTTACCTTTTTTGTTCTCCAATCTGTCAGTTGTCTctgtggtttaaaaaaaaatattacttgTGGGATCTTTGGGTGGGGTCCAAGTCGTTCGCTTCATGCAGATGTTTCGGGGAGGAACACATTAGTGAAGGCCTCACAGCAAACCACATTTTGGGATGTGAGACCCGATGTCCCTGTGTGTCACTCTGGGCATCTTGCAGTGGAGAGAGACTGGATTCCCCAGTGTGTGATTTAGAATTGGGGAGGGAAAAACACTGCAATGAATAAAATGTctccatgttatttttttttacggGTTGTGTCATCTGTTCGAGCACACGCTGCATTTAATTGTGCTGTGTTGCATATTTCTGGTAGTCTGACACTCACGAAAACCAAAAAGGAAAGAAAGGCATATGTCTGACATGGGAGGGTAGCTTTGATTTGCCAAAAGGTGTAACATtcctgccatctagtggaagaaaATAGTATCACATGTTGATAATTTCCAGGTACGGTATGAGTACAATCTACTACTCAGTTTAACTCAATGTTATGGTAGGCCATTTGAAATGCAGAAAATACGCTTTTGATACAGAGGGTTTTAAAGATTGATTTGGTTCATTACATTGTACAAATGAAAGCTTCATCAATAAACCAAGCTTGAAACGAATGGTTATTGCCAGTATAAAAATGGAGCCCACTTTCAACCACAACAGAACACATTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU819505 lncRNA downstream 13844 52779036 ~ 52779473 (-) True G721289
TU819504 lncRNA downstream 14721 52778378 ~ 52778596 (-) True G721288
TU819473 lncRNA downstream 66533 52719286 ~ 52726784 (-) False G721260
TU819474 lncRNA downstream 66533 52720787 ~ 52726784 (-) False G721260
TU819472 lncRNA downstream 66533 52724948 ~ 52726784 (-) True G721260
TU819641 lncRNA upstream 156097 52974797 ~ 52977530 (-) True G721414
TU819652 lncRNA upstream 168217 52986917 ~ 52989556 (-) True G721425
TU819663 lncRNA upstream 189989 53008689 ~ 53010120 (-) True G721435
TU819632 lncRNA upstream 195918 53014618 ~ 53100336 (-) False G721407
TU819631 lncRNA upstream 258732 53077432 ~ 53080513 (-) False G721407
XM_021612883.2 mRNA downstream 36715 52733010 ~ 52756602 (-) False LOC110530084
XM_021612884.2 mRNA downstream 36715 52733010 ~ 52756602 (-) True LOC110530084
XM_021612882.2 mRNA downstream 36722 52733010 ~ 52756595 (-) False LOC110530084
XM_021612885.2 mRNA downstream 36756 52733010 ~ 52756561 (-) False LOC110530084
trnav-cac-85 mRNA downstream 63347 52729898 ~ 52729970 (-) True trnav-cac-85
XM_021612892.2 mRNA upstream 87667 52906367 ~ 52917437 (-) True LOC110530090
XM_021612900.2 mRNA upstream 130301 52949001 ~ 52953245 (-) False LOC110530094
XM_036985651.1 mRNA upstream 130301 52949001 ~ 52967822 (-) False LOC110530094
XM_021612898.2 mRNA upstream 130301 52949001 ~ 52967823 (-) False LOC110530094
XM_021612899.2 mRNA upstream 130301 52949001 ~ 52967823 (-) True LOC110530094
TU819491 other downstream 31866 52761039 ~ 52761451 (-) True G721275
TU817704 other downstream 1534298 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 1853846 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 2904065 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 2955621 49785674 ~ 49837696 (-) True G718489
TU820029 other upstream 644482 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 679448 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 984743 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 1107528 53926228 ~ 53927959 (-) True G722670
TU821119 other upstream 1305679 54124379 ~ 54139341 (-) True G722761

Expression Profile