RNA id: TCONS_00035361


Basic Information

Item Value
RNA id TCONS_00035361
length 3021
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_017921
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9575374 ~ 9580446 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTTTGGCAGGACAGAGGGGGCTCTCTGCGGGGCAGAACTATATCAAAGACCCTTCAAACACAGGAATACTCCCACCGTGCCTTAACAAACCATATGTTTGTCAACTTTGAAGAATTTTCAGCCAGCCCCGATTCGACAATGACTGCCGTTGTGTCCTCTTTCTTCGACTACGAAGTGACGAATAAGAACAATAAGGTGATGACCTTCAACAGTCCCCTCTCCAGTCCCCATTTACAGTCTGTCCCCTCCATGGGTGCCAATTCCTCCTTTACCCCCACCGGGACCCTGCTGGACAGGAAGGTGGTGGGTGCCCCTTCAGTGGGACTCTATCAGCGCCGCCACTCTGTGTCCGTTACCAGTTCCAAATCAACACAGAACCAATTTATAAACAATCTCAAGATGGACAACTCGGCCTCCATAAACGGCAGCAGCAACAACAAGGAGAACCGCTTCCGTGACCGGTCCTTCTCCGAAAACGGGGAACGTCTGAGGCCAAGCAGCATTACATGCATTAGTGCCAATGGAAATGGCCAGGTCAACTCAAGCCGCTATAAGACCGAACTCTGCAGACCCTTCGAAGAGAACGGCACCTGTAAATACGGCGACAAGTGCCAGTTTGCTCATGGGATGCACGAGCTTCGTAGTCTAAATCGCCACCCTAAGTATAAGACCGAGCTCTGCCGCACCTTCCACAGCATTGGTTACTGCCCGTATGGGCCACGATGCCACTTCATCCACAATGCCGAGGAGCGCCGCGGACCCCCTCCTCTCTCATCGTTCAATAAGATGGAGCGCCCCCGTCTTCATCACAGCTTCAGTTTTGCCGGTTTCCCAAGCTCAGGTGGTTCCCAGGACAGCCCAACCTCTGTCACACCTCCGCCCCTGTTTTCCGCAGAAGACCTCAACGAGTGGTCCAGCAACCCGTTTGCTTTCTCAAGTCAAGAGCTCGCCAATTTGTTTGTACCCAGTTTAGGTGGTACCACCATTCCCGATCTGCCTGGTCCTCACTCACCCACCTCCTTCTTCAGACCCATGTCCGAGTCTCCACCAAGCCCTCCAGACTCCCTTTCCGACCAGGAAGGCTACCAGAGCAGCTTGGGCAGCCAGAGCGGATCTGAGTCACCACTGCTGGATGCAACGCGTCGCCTTCCCATCTTCAGCAGACTCTCCATCTCTGACGATTAAAATCTTTCCCGAGAGGTTTTAGGCCTGAGAGAGAAGGCATGGAGAGCTGGCGAGAATGAGAGAGTAATTTTCCTCCTAGCAATCCCTTCCTGTCCTTGCTTTGTTTACAGCAGAGAAGTGGACTAAAGTACAGTGTTCTTGTAGCCACTGAGTCAAATCAGAACTTACTACCCCCCTGTAGCATCAAACTTAAGTGTCTACCCGTGCCTCCCTAGACGTCGTTAACATGCCTGACGTAATGCAAAAACCAGAACTGTTCCCTTCAAGGCCTACTGGAACATGCTAAATCCATACTTAGGTTGTGGTGTTCAAACTAAAGTGCGGTTTCCTGAATCATCCAAGGACCTTCTTGTTCAAAGAATCTACTGAATTTTATAACATCAGACCTAAAGGTGCCACTTTTCTTGCAGGAGATCCTTGCTGGTAGATCATCGGGACTTAAAGTGCCTATCAAACTAATTATTTTCCTACTTTTCCAATCAAAGTGATTATTGTCCGGGGTAGAAAAGGTTTAAAGAAAAGAATCAAACCCATCTGAGAGTTGTATGAATCATTCTGAAAGTATGCCTAGTGGTGCTAAATGTGCTGTCACCGTGGTAATTATCCCTAGAACATGTGATCCCtcactcttaaaaaaaaagtgtccgCTGGTTGTTGGATTATGTAAGAGAGAAGAGGTCCTTCCTTTAATCTTTCTGTTGGAGTTACCACTAAAGATATGACTTCAGTGGCCACTAATTTTTTGGTTGAAATGTTTCAATATCATTATTTCAATATCGTATTTCCcctattattgttataataacgTTATTATTGCATCATTACAACTCTTGTTGGTATTTTCTGTTTGGAAAATGAGAACTTTCGAACCGAAAGTTTTGCTTGTCAATGCTTATTTAACttatcaaaaatgtatttattgctgattgtaagcatttttttattttgtttgtatttatctgGATAATGAAACAATAGAATATATTTTCCTTTATGTTAAATTATGATCTTCCGTATTAATCGTAAGATTGTGAAGACCTTTTTTTGCGTTAAGTTTCAACAGTTAATATATTATACTGCAATGACATTTTGTAACTacgttttgatttatttttaaagtgaaacttaatttaaaatgagAATGCAAAGaggatttttttgcattttatttattattttcctccCTGATGTTGGACTGCAGTTTCAGGATGTTTATGCCTCTATAATCCTTTATTATTTGGCTCCGACCGTCTAGAATGTAAACAGACTTGTCTTGACAATAACAGTCCTGTGCCTGTGATTTTTATAAATCTCATGTTTAGACTGGGATCCTCTCATCAAGACTCAATTCAGTATGAACAAATCGTAGACAGTAAATGCATTATAGTGCCAATCTCACGACCCCCGCGGTGGTCCAAACCTCTGATCGCAACATTCTGATCCGACATGTCTAAAACAGACGGTTTATAAGGGAATTGTTAAAtatgcatttgtgtatttatttcgCCCGTTTTAAACCATGATGTGTTCACCAGTAAGCATGTGTTTTTTTGATTTGTTATGACTCAAAATTCGTATTTATTTACAGATTTTGGACCACTTCTACTTTCCAAGTGCCTAACAGTACATTCCGAGAGTCTTGTACCTTTTAGGATTGTAATCCAGAGTCGTTATTTAGATTTTAGCAGGAATTCAAGGTTAACAGGATTGACATTGACAGAACTACAGTTGAATGTGTCCTATGTTTGCAGCTATTGCTGTTCACAACAATATGTTTTCTTTTGTAACGACAGATTGCAGTTTAAACcaataaaaatatctatttataaGCTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2391 Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Is expressed in several structures, including epidermis; nervous system; neural crest; neural plate; and ventral mesoderm. Orthologous to human ZFP36L1 (ZFP36 ring finger protein like 1).

Ensembl:

ensembl_id ENSDART00000014168

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035348 lncRNA downstream 740280 8794502 ~ 8835094 (-) True XLOC_017914
TCONS_00035342 lncRNA downstream 1254060 8122693 ~ 8321314 (-) False XLOC_017913
TCONS_00036797 lncRNA downstream 1622192 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00036796 lncRNA downstream 1936722 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00036795 lncRNA downstream 2364178 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036798 lncRNA upstream 496711 10077157 ~ 10078215 (-) True XLOC_017930
TCONS_00035378 lncRNA upstream 533582 10114028 ~ 10117997 (-) True XLOC_017931
TCONS_00035381 lncRNA upstream 767337 10347783 ~ 10399176 (-) False XLOC_017933
TCONS_00035380 lncRNA upstream 767337 10347783 ~ 10422813 (-) True XLOC_017933
TCONS_00036799 lncRNA upstream 1399012 10979458 ~ 10992289 (-) True XLOC_017935
TCONS_00035360 mRNA downstream 112925 9428966 ~ 9462449 (-) True XLOC_017920
TCONS_00035358 mRNA downstream 112941 9428965 ~ 9462433 (-) False XLOC_017920
TCONS_00035359 mRNA downstream 138853 9428966 ~ 9436521 (-) False XLOC_017920
TCONS_00035357 mRNA downstream 147353 9421448 ~ 9428021 (-) True XLOC_017919
TCONS_00035355 mRNA downstream 297122 9241794 ~ 9278252 (-) False XLOC_017918
TCONS_00035362 mRNA upstream 63053 9643499 ~ 9658405 (-) False XLOC_017922
TCONS_00035363 mRNA upstream 63438 9643884 ~ 9674877 (-) False XLOC_017922
TCONS_00035365 mRNA upstream 171297 9751743 ~ 9755550 (-) False XLOC_017923
TCONS_00035366 mRNA upstream 171936 9752382 ~ 9760424 (-) False XLOC_017923
TCONS_00035368 mRNA upstream 173626 9754072 ~ 9755546 (-) True XLOC_017923
TCONS_00035349 other downstream 638370 8936903 ~ 8937004 (-) True XLOC_017915
TCONS_00035340 other downstream 1156317 8122693 ~ 8419057 (-) False XLOC_017913
TCONS_00035337 other downstream 1581290 7986950 ~ 7994084 (-) True XLOC_017910
TCONS_00035333 other downstream 1946103 7612282 ~ 7629271 (-) True XLOC_017907
TCONS_00035322 other downstream 2503763 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035364 other upstream 63619 9644065 ~ 9651062 (-) True XLOC_017922
TCONS_00035367 other upstream 172085 9752531 ~ 9760424 (-) False XLOC_017923
TCONS_00035370 other upstream 196733 9777179 ~ 9780867 (-) True XLOC_017924
TCONS_00035371 other upstream 325822 9906268 ~ 9906384 (-) True XLOC_017925
TCONS_00035374 other upstream 472959 10053405 ~ 10053701 (-) True XLOC_017928

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_05514127_05516929.mRNA True 3283 mRNA 0.43 2 CI01000051 5512756 ~ 5517785 (+)
bowfin (Amia calva) TU185834 True 3971 lncRNA 0.41 2 CM030141.1 2350041 ~ 2354058 (+)
mexican tetra (Astyanax mexicanus) TU185834 False 1432 lncRNA 0.45 8 NC_035911.1 35304455 ~ 35314187 (+)