RNA id: TCONS_00035658


Basic Information

Item Value
RNA id TCONS_00035658
length 533
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_018094
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25853012 ~ 25878607 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTCAAACCAGGACACGATAAGCTGATGGCGATCAAGCAACAGCAGCATCTGTTTTCAGAGCTCAGAGATACTTTTGCCCGTCGTCTCACCAACCACCTCAACAATGTGTTTGTGCACCAGTTCAACCACTTCAGTCACTTCAAAATGACCATCCCTCAGTTCTATAGGTCGTCCTGTCTGTCACTCCCTggccATGATCAGAGCTCCACACTTGCCCAGCACACCGCTGAGCTGACACTGCCCAAACACAGCCCTCTGCACAGAGACCTGCTGCGATACGCAAAACTCATGGAGTGGCTGAAGAATACACAGAGAGAGAAATATGAGGGTCTCTCCAGGacttatatGGATTACATGACCCGGCTGTATGAGCGCGAAATCAAGGACTTTTTTGAAGTGGCAAAGATCAAAATGGCGGGCACTAGTAAGGATGGGAAAGGAAAGTTTGGTAAGACCTCAATTAAAACtaagtattatttaattttcatgaaGTTATTAAACATACACTTAGAAAAGATAATTTTGTCCATGC

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006893 Golgi to plasma membrane transport biological_process
GO:0051601 exocyst localization biological_process
GO:0000145 exocyst cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-1057 Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to be part of exocyst. Predicted to be active in plasma membrane. Orthologous to human EXOC1 (exocyst complex component 1).

Ensembl:

ensembl_id ENSDART00000145989

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035653 lncRNA downstream 154161 25710791 ~ 25712415 (-) True XLOC_018092
TCONS_00036841 lncRNA downstream 196654 25666049 ~ 25669922 (-) False XLOC_018091
TCONS_00035640 lncRNA downstream 261291 25600105 ~ 25605285 (-) True XLOC_018088
TCONS_00035638 lncRNA downstream 314900 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00036840 lncRNA downstream 454395 25401086 ~ 25412181 (-) True XLOC_018081
TCONS_00036842 lncRNA upstream 191915 26062545 ~ 26070949 (-) True XLOC_018101
TCONS_00036843 lncRNA upstream 575273 26445903 ~ 26458381 (-) True XLOC_018107
TCONS_00036844 lncRNA upstream 609432 26480062 ~ 26523214 (-) False XLOC_018108
TCONS_00035696 lncRNA upstream 673620 26544250 ~ 26550760 (-) False XLOC_018110
TCONS_00035697 lncRNA upstream 677607 26548237 ~ 26550803 (-) False XLOC_018110
TCONS_00035654 mRNA downstream 118169 25739979 ~ 25748407 (-) True XLOC_018093
TCONS_00035649 mRNA downstream 157329 25659839 ~ 25709247 (-) False XLOC_018091
TCONS_00035650 mRNA downstream 195234 25659954 ~ 25671342 (-) False XLOC_018091
TCONS_00035652 mRNA downstream 196763 25666815 ~ 25669813 (-) True XLOC_018091
TCONS_00035647 mRNA downstream 222445 25642133 ~ 25644131 (-) False XLOC_018090
TCONS_00035659 mRNA upstream 2966 25873596 ~ 25878586 (-) True XLOC_018094
TCONS_00035660 mRNA upstream 15861 25886491 ~ 25902141 (-) False XLOC_018095
TCONS_00035661 mRNA upstream 16150 25886780 ~ 25902141 (-) True XLOC_018095
TCONS_00035662 mRNA upstream 58810 25929440 ~ 25934439 (-) True XLOC_018096
TCONS_00035663 mRNA upstream 84488 25955118 ~ 26001290 (-) False XLOC_018097
TCONS_00035651 other downstream 157227 25666049 ~ 25709349 (-) False XLOC_018091
TCONS_00035648 other downstream 221739 25642680 ~ 25644837 (-) True XLOC_018090
TCONS_00035639 other downstream 315760 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035636 other downstream 325822 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035635 other downstream 328159 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035674 other upstream 248709 26119339 ~ 26119459 (-) True XLOC_018102
TCONS_00035675 other upstream 324096 26194726 ~ 26194841 (-) True XLOC_018103
TCONS_00035681 other upstream 520165 26390795 ~ 26391957 (-) True XLOC_018105
TCONS_00035690 other upstream 609798 26480428 ~ 26488945 (-) False XLOC_018108
TCONS_00035691 other upstream 631856 26502486 ~ 26511273 (-) False XLOC_018108

Expression Profile

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