RNA id: TCONS_00035650


Basic Information

Item Value
RNA id TCONS_00035650
length 5154
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_018091
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25659839 ~ 25709349 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGTGGTGCCTCTCCACAGCACTCAATACAAACCAAAGGTCCCTTGTCTTATCATTGGTTTAATGCCGTTACATGGGAACCGTATGATTCTGTCTTGTAAGAGGCACTTGGCAACTGCAGATTTACACTTTAAATGAGCGGCGACGGCAGGGCAAATTCCAGCCATTCCGGCGTCTATTTGggaaaaagaaaaggagagaaGCAGAACGTGCGTTTGAGGGAACTGAACTTAAACCTTGTCATTCCACTGATGATGTCTGCAATGGGGTGGACTCAGCTAACCAAGAGAATGATCAGTATTTAagGGAGTCAAACACCCTTGGGTCCCGAGCTTTTTCACACGAGAGTGTATTTATCCCTGAGGACTCTGAGAAGACACATCCAGGACAGACAATGTCCCAGGAGAACGTTTCCGACAAAGTCAGAAACATTCAGAAGCAAATTGGACATAATATAAAATTTGGTCAGAGACCCCCTTCACTTAGAAAGAGTGAGGGAGATGAAGGCAGCTCAGATGAGGAAGAGGTACCACAAAGTCCATTGAGAGTTCTTGCTCAAGTGGAGAATGAGCCACCGGAGACATCAGCCAAGGAAAAATCTGTCAGCCATGACACTGTCCAGCATAGGACTCCGGTCAAATCCCCACGCACCAAGCGCCCACCTCCCCCTGGCACAATTGAGTCTATCAATCTAGATGCTGTCCCTCAGTCTGTCCCACGCTTGGACAACACTGCTGCCAAACACAAACTGTCTGTCAAACCGAAGAACCAGAGGGTGTCTCGAAAACATAGAAGATTCACACAGGAGTTTCATGAAGATGATTTCTCTGAAATTCAAGAAGAATTTGAAAAGGATGAGGAAGTGTTTGATTCATCAAGAGAGGATTATGGTATTATCCATGGAAGTAAAGAAGATTATGAACCTACTGAAAAATCACAGAGGCAACGATTTCATGAGGAAGAGAAAGAACACCTTGAGATAAAGAAAAGAGAACAAGAGGAAGAGAGAAAGATGGAAAAACACCGGAGGATGATTGAGGAGCAGAGGTTAGAAGAAGAGAAGCGACGCAGACAGGAAGAGGAAAGGCTGCAAAAAGTGGAAGAGGAGAGGAAGCAACGAGAGGaagaagagaggaaaaaaagggaagaggaggaaaggaggagagaAGAAGAAGAGCGAAGATTACGACATGAGGAAGAGCGAAAGAGACAAGAGGAGGAGGAAAGAatgaagaaagaagaagaagaaagaaaaagagcagaagaggaaagAAGGCAACAAGAACTTTTGGCAGAGCGTCTTCGTCTGGAAgaggaaagaaaaagagaacaggAAGAGAGAAGgagaaaagaggaggaggaggcagAGAAACGCAGGATTCAAGAGTTACAAGAGAAAAGGCTGAGAGAGGAAGAACATCGCATTCGTGAAGAAGAAAGATGTCGACAAGAGGAAGCAGAGAGAAAAAGACTAGAGGAAGAGGAAAGAAAGAGACAACTGCAAGAAGAGAAAGCTGGATCTACTGACCCTGAATGGAAAAGAAAAGCAGAGGAACTGAGATGGAGAGAGATGGAGGAGAGACAGAGACCCTTCACTTTTAAAGTCTCTTCGGGTGAGAAGCAGATACTCTTCCAGAAGGTCAATCTCACGCCTGTTACTCCAGCAACTGGCCAACAGGGTGAAACAACTGCTGAAACTTGGGAGGGAGCTAAAGCTTCTTCACCAGGAGGGCCAGATTCACCAACTCTGTCTTCTTCTCTTTATGTCCCGCATACTGCAATTCTTGTGACAGGAGCCCAGCTTTGTGGAACTGCAGTTAATCTCGATCAGATCAAGGACACAGCTTGCAAGTCACTTCTTGGcctttctgaaggcaaaaaggccaTGGGCACTCCTCCATCCAAGAGCAAGACATCTCCAGATCGTAAATCTGGAAAAACCAAATCCGTATTTGAGTCTTCCTTGTCTACAGATCAATCCAACGCTGCTGTCCTGGCAGAATGGGCAAGTATTAGGTCCAAAATTTTTAAAGGTGCTGAAGAGGGAAAATATCCTGAATACACAGATCAAAGTCGCAGGCCAACAAGTGAAGATCTAAATACAGTGCCATTCTCTCACACCAACCTCAGGAAAACTATGTCAGCCAGTGCGAAGTTTTCCATCACGCCAGCCAGAAAAAAATTTGCTGATTCCAACAGAAACTCTGAGATTTTTGGTCAGGAAGAAGGTGTGAAAACAGAAAGTGCATTTACAGAAACTTCCCCTGTCCAAAAAGAGTTGCCCTCTTTAGGTACTAAGGTCCAGAGTAGGGGAAGCAAGCTTGTCCGCATTGCAGACGAAGAGTGCATGTTTGCCAAAGACCTTCCCTCATTCCTTGTTCCTAGTCCACCACATGGATCTCCCAAGTCCCAGAGATCTGAGAGTGGCTCCCCAATTCAGGCAGAATCAGAAGATTCAGATACAAAAGATGAAGATGGGGAACAGAAAGCACAGGGTGGTGATGAGCAGCCATCCCCTTTTGGAATCAAATTGAGAAGAACAAACTATTCTCTTCGCTTCCACAATGAACAATCTgcagaaaagaagaagaaaaggtaCAGTGCAGGAGACAGTTTTGAAGGAGTCCCAGTGCCCCTGACGGCCATTGACCAAGACTCTGACAATTCTACACTCTCTGAAAAATCTAGCCCCATTTCTCCACAACAAGAGAATATTGAATTTCAAACCACAGTTGCACCCAGTAAAGAATCTCGTAGTAAGTTTAGCAGAAGTACTCTCCCTTTGGCACGCACCGAAGGTGACAACATGTCCCCCAAACCTCCACTTTACCAAAAACCTGCTACCTCCCCCAAACCATCTGAAGGTGCCACACCTCTACTTTCTCCTCTTCCAAAACCTGGTAGAAGGACTTCAGGAGACACAATTTCACAAAGGACTGGGGAAGCAGAACAGGTAGCTACTGAGCAAGGCAGTGATCATAAAGGAGGAGTTACAGCATCTGGACCATCACAGAAAAGTGGACAAGGAGAGGAGGATGTTAAAGAAAAGAAGTCATTTTTTCCATCCATTAGCATCCCATGGAGAGAAAAAACAGATCGCAGAACAGAACTCATCAAAAAAGAAAAACCATCTCTGCAGGCCAGGCATTCTCTGGACAGCTCACGATCACAGGACAAAGAGACAGGACCACTTTGGATCACTCTGGCACTGCAAAAACAGAAAGGCTTTAGGGAACAGCAGCAAAACCGAGAGGAAAGGAGGAACCAGAGAGAGGCTAAACTGGCTGAGAAACAAGCTAGGGACAGAGAAAGTGCTGGAAGCAGTCCCACTGAGGATAAAGGCAATGGGAGCTCCAGCATCATATCCAAGCATCAAACAGCAGATGAAAATAAAAGACCAGACACACTCCTGGCTCGCTTTGAGCGACGTGACAACTTGAAGAAAGCCAATACCTTACCCAGCTCAGTCACAGTTGAAATAACAGACTCTACACCATCGCCGCCAGCAACAAAGGATGTGACCAAGCGCTTCCCTCCTGGTGACACTACCCAGGTTTCTACTGAGCCTGCATGGCTTGCCCTAGCAAAGCGTAAGGCCAAAGCCTGGAGCGACTGCCCACAGATCATCAAGTGATCCAATACCACTGACCACAAGTCTACTTCATCCACATCAGTTAGCAATCACTGCACCCCAGCTCACCTAAAGGCTCCAAACAAAAGGTCCATTATTCACCTTAAAGCAGGCATTTCTGGACAACTGGGATTTTAGTAAagaaaacatacttttttttcccaaaatgtaGTAATTTTACATATTTGCATTGAGTTTATTTTATCAGATGATCAGATGTCAATCATCAATCAAGCCCTAGAATCTTCATCGAGAGGTTAAAGCCCTTCAAACTTCTGAGATCATCAGTAGTCCTGTTAGCAGTATAAATACACAATGCATGTCAAACTGTTGATCCTAGATATTACTAAAACAATGTGAGTGGTTCACATTcagtaacacattttaaataagacGAGATGTTATGTTACTGCTTTGGTGGCAATTCTGGGATGCAATTCAAGGGCTATTAATAACACAACAGATAAAACCTTCACCAGTTTCACTCCTCGCACCCCCAAGCATGAAAATCAGAGAAACAGTTTTGTAATTTTCTTTTGAGTGCTGTTTTTCCACGTACACACTCAAATGAGTTGGCGCTCAAAGACCTAGCAGATGGACAGACATCACTTTTTTATTTCGTAACTTATTATATTTGATATCTTGGCAAAGTATAAAGATCTTCACTGTGTCCGTGACAACTGTGAGTAACGTCATTTTAACTATTGCTAAAAATCATCATGTCAATGACACGTCAGCACTGTTTACTTCTGTAATTAACTAACATTGAATTTTTCCTTCAAGTTTCCATGACATGGTATATATGCACTTGAGCCGTGCTGtcagttgaaaaaaaattgcaatgtctATACCCGCCTGTTTACGTAGAATTGGGCTCCGCCTGCTTGCTGTATAATAAACAATGCTATCCTGGCGTAGCGTGTGCTAGCATCACTTTTACCGCTAATTAACAAAACCTGCGACACTGCTTAGTGATGGGAGATCGGTGTTTCAAATGCAGCATCCCAGGGGGAATAAGAACAAGAGGTCCCTTATAAAAAAGGGAGCAAGAATGGACTATTAACAGACATCACCTCTACGTCCTTGAAAAGGCAGCTAACCCCAGATCGCTTCAGGAGGGATTGCCCTTGTAGGTGAACTGTAAGCCACATTGGATTATaaaaaaagcatctgctaaatgaaggAAGTTATTGAACAGAAGCCTTGATCTCTCAGCAGACTCCACTATCTAATGTAATGttgtatgtatgtaatgtatgtaggtatgtatgtatgtatagagGTGAAATGAAACAGACTGTATTCCACTGGAGATCTCCTGAACTGCAGTTGCGTCACTTAGTTTTTACATTGGTTGTGTGCAATAGTGTAGCGTAAACAGTGTTGTATGTgatatgaaacaaaacaattgttGAAAATTGCACTTTTTTTGGTTCCACTTAAGAAAAATCCATTAAAGAAAAGGTGACGCAAAATGTTATGATATATGtagagtaaattaaaaaaagctgtTTGAAACTGG

Function

GO:

id name namespace
GO:0010669 epithelial structure maintenance biological_process
GO:2000813 negative regulation of barbed-end actin filament capping biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0030277 maintenance of gastrointestinal epithelium biological_process
GO:0005829 cytosol cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-321 Predicted to be involved in maintenance of gastrointestinal epithelium and negative regulation of barbed-end actin filament capping. Predicted to be located in cytosol. Orthologous to human CRACD (capping protein inhibiting regulator of actin dynamics).

Ensembl:

ensembl_id ENSDART00000182775

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035640 lncRNA downstream 54669 25600105 ~ 25605285 (-) True XLOC_018088
TCONS_00035638 lncRNA downstream 108278 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00036840 lncRNA downstream 247773 25401086 ~ 25412181 (-) True XLOC_018081
TCONS_00036839 lncRNA downstream 348500 25307795 ~ 25311454 (-) True XLOC_018080
TCONS_00036476 lncRNA downstream 927645 24729131 ~ 24732309 (-) True XLOC_018078
TCONS_00035653 lncRNA upstream 39449 25710791 ~ 25712415 (-) True XLOC_018092
TCONS_00036842 lncRNA upstream 391203 26062545 ~ 26070949 (-) True XLOC_018101
TCONS_00036843 lncRNA upstream 774561 26445903 ~ 26458381 (-) True XLOC_018107
TCONS_00036844 lncRNA upstream 808720 26480062 ~ 26523214 (-) False XLOC_018108
TCONS_00035696 lncRNA upstream 872908 26544250 ~ 26550760 (-) False XLOC_018110
TCONS_00035645 mRNA downstream 14804 25639470 ~ 25645150 (-) False XLOC_018090
TCONS_00035647 mRNA downstream 15823 25642133 ~ 25644131 (-) False XLOC_018090
TCONS_00035646 mRNA downstream 16287 25639490 ~ 25643667 (-) False XLOC_018090
TCONS_00035644 mRNA downstream 28698 25618114 ~ 25631256 (-) True XLOC_018089
TCONS_00035643 mRNA downstream 33261 25618114 ~ 25626693 (-) False XLOC_018089
TCONS_00035654 mRNA upstream 68637 25739979 ~ 25748407 (-) True XLOC_018093
TCONS_00035655 mRNA upstream 181670 25853012 ~ 25878607 (-) False XLOC_018094
TCONS_00035657 mRNA upstream 182055 25853397 ~ 25877793 (-) False XLOC_018094
TCONS_00035656 mRNA upstream 182055 25853397 ~ 25877793 (-) False XLOC_018094
TCONS_00035658 mRNA upstream 195234 25866576 ~ 25870630 (-) False XLOC_018094
TCONS_00035648 other downstream 15117 25642680 ~ 25644837 (-) True XLOC_018090
TCONS_00035639 other downstream 109138 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035636 other downstream 119200 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035635 other downstream 121537 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035626 other downstream 290074 25368510 ~ 25369880 (-) False XLOC_018081
TCONS_00035674 other upstream 447997 26119339 ~ 26119459 (-) True XLOC_018102
TCONS_00035675 other upstream 523384 26194726 ~ 26194841 (-) True XLOC_018103
TCONS_00035681 other upstream 719453 26390795 ~ 26391957 (-) True XLOC_018105
TCONS_00035690 other upstream 809086 26480428 ~ 26488945 (-) False XLOC_018108
TCONS_00035691 other upstream 831144 26502486 ~ 26511273 (-) False XLOC_018108

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_04689061_04697144.mRNA True 3795 mRNA 0.46 10 CI01000325 4688548 ~ 4697144 (-)