RNA id: TCONS_00035841


Basic Information

Item Value
RNA id TCONS_00035841
length 1049
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_018186
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 32009271 ~ 32045182 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAGTATGTGCTTTCTGTTTGAATACTTTCCTTACAGCCGTCCCCGAACCCAAAGCACTTCTGCAAACTGTGAGAGGGAAGTGGTTGCACAGAGTTGCCAAAACTTTTCCACTCTCATAACTGACATTTTGGCAGCATGGCAGGCGGGTCCGTGTCGGAGTGTAAGGAGTATCTGTTTAAAGTTTTGGTTATCGGGGAACTTGGTGTGGGAAAGACTAGCATCATCAAGCGATATGTTCACCAGCTCTTCTCGCAACACTACAGAGCGACCATAGGCGTGGATTTTGCTCTCAAAGTCTTAAACTGGGACAGCAAAACACTAGTACGACTACAGCTGTGGGACATCGCAGGTCAGGAGCGCTTTGGAAACATGACCAGAGTTTACTACAAAGAGGCAGTGGGTGCATTTATTGTGTTTGACATTACTCGAGGCTCCACGTTTGAGGCTGTTTCAAAATGGAAGCATGATTTGGACACCAAGGTGAAACTGGCCAATGGCAATCCTATACCTTCAGTCCTTCTGGCCAATAAATGCGACCAGAAGAAAGACGGATCCAACAATTCCTCACTCATGGACAACTTCTGCAAGGAGGCTGGCTTTTTGGGTTGGTTTGAAACATCAGCCAAGAAGACCATGAAAGCTGCCATATTAGATCAAGTATTTAAGATGGCTGACATTCTCTATGGTATTAGGGCCAAAACGGCACCACAGCGGCAGATTCTTAAGAACATTAGCCACTCCTCATGCCTGAATCACCAGACACATGTCAAATGTGCAGCGTGTAGCTCATCACGTGAAGCAGCGTGCGGGGTGTGTGGGATTCATGAGGAACGAATTTATGTCTTGCCTTAAGCTACTGAACTTTGCTCATTGGTTTGAATCAGTGATAGTGGTTGTTTGATAGAAAACTTGCATGACTGTTGCATTGGTAATGCTATTTAAATGAACAGTTCACCTAAATATGTATATTTGCTTGCTTATGAATCATCAGTTCCATTCAATGTGTggcatgattttatttttaataaaattcatATAATTCATAAC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0032438 melanosome organization biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0042470 melanosome cellular_component
GO:0012505 endomembrane system cellular_component
GO:0031982 vesicle cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031006-10 Predicted to enable GTPase activity. Acts upstream of or within notochord cell vacuolation. Predicted to be located in Golgi apparatus; membrane; and vesicle. Predicted to be active in melanosome; mitochondrion; and trans-Golgi network. Is expressed in several structures, including Kupffer's vesicle; axial mesoderm; neural crest; retinal pigmented epithelium; and shield. Orthologous to human RAB32 (RAB32, member RAS oncogene family).

Ensembl:

ensembl_id ENSDART00000152970

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036878 lncRNA downstream 11371 31996190 ~ 32004402 (-) True XLOC_018185
TCONS_00036485 lncRNA downstream 31922 31981452 ~ 31983851 (-) False XLOC_018185
TCONS_00036877 lncRNA downstream 48562 31936024 ~ 31967211 (-) False XLOC_018185
TCONS_00036876 lncRNA downstream 271267 31557868 ~ 31744506 (-) True XLOC_018183
TCONS_00036875 lncRNA downstream 669192 31310926 ~ 31346581 (-) True XLOC_018181
TCONS_00036879 lncRNA upstream 91968 32137025 ~ 32139068 (-) True XLOC_018188
TCONS_00036880 lncRNA upstream 218131 32263188 ~ 32269895 (-) True XLOC_018191
TCONS_00036881 lncRNA upstream 612029 32657086 ~ 32658262 (-) True XLOC_018197
TCONS_00036882 lncRNA upstream 1185106 33230163 ~ 33293844 (-) True XLOC_018200
TCONS_00036883 lncRNA upstream 1304117 33349174 ~ 33419013 (-) False XLOC_018201
TCONS_00035838 mRNA downstream 8564 31929377 ~ 32007209 (-) False XLOC_018185
TCONS_00035835 mRNA downstream 109805 31745949 ~ 31905968 (-) False XLOC_018184
TCONS_00035837 mRNA downstream 206994 31786665 ~ 31808779 (-) True XLOC_018184
TCONS_00035836 mRNA downstream 233832 31769483 ~ 31781941 (-) False XLOC_018184
TCONS_00035834 mRNA downstream 272220 31742993 ~ 31743553 (-) True XLOC_018182
TCONS_00035843 mRNA upstream 2328 32047385 ~ 32112818 (-) False XLOC_018187
TCONS_00035844 mRNA upstream 3524 32048581 ~ 32110882 (-) True XLOC_018187
TCONS_00035845 mRNA upstream 96505 32141562 ~ 32149020 (-) False XLOC_018189
TCONS_00035846 mRNA upstream 100972 32146029 ~ 32148901 (-) False XLOC_018189
TCONS_00035847 mRNA upstream 101660 32146717 ~ 32149020 (-) True XLOC_018189
TCONS_00035840 other downstream 4774 32010010 ~ 32010999 (-) False XLOC_018186
TCONS_00035824 other downstream 970568 31045075 ~ 31045205 (-) True XLOC_018178
TCONS_00035814 other downstream 1640867 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035813 other downstream 1641689 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035812 other downstream 1642346 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035855 other upstream 415218 32460275 ~ 32460391 (-) True XLOC_018195
TCONS_00035856 other upstream 604786 32649843 ~ 32649959 (-) True XLOC_018196
TCONS_00035866 other upstream 1426164 33471221 ~ 33475485 (-) True XLOC_018202
TCONS_00035876 other upstream 1556356 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035878 other upstream 1611106 33656163 ~ 33686380 (-) False XLOC_018209

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_08451080_08466811.mRNA True 3024 mRNA 0.37 3 CI01000325 8449373 ~ 8467540 (-)