RNA id: TCONS_00035847


Basic Information

Item Value
RNA id TCONS_00035847
length 551
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_018189
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 32141562 ~ 32149020 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGCTACTCAAGATGACACTCACAGCTAATTCATCTGCATGATGAACAATCGTGAACAACACATCATTTATTCGTAAATAACGAGGAAACCTATTGAAAATGGATcactttagagatcagAGTTTTAATCTAGACTCCCCATCTAAACAGAGTTATGTTGGCAGTTTTTATCAGCCACCAGAGAAAATGTCAAGACCTTTGTATATGAACCCAGACACACATCCGCTCAACAGAAAGAGCTCAGGTTTGCAGGATATCAGCCCACAGCTTTATCAGACAGTTCCTGATGCTGGAAGCAGAGCAGCAGTGATTGCAGCCCTGAAAACACTGCAGGAGAAGATGCGGCGCTTGGAACTGGAGAGAGTTCATGCAGTAAAGAACGTCCATCACTTCTCTCAACCTACTCGACACCAGGAAGATGTTTCTGCATCAAAGGAGCAAGAGCACAACATGCGGGACAATGACTCAACACAGAGGAAAGTGCTGGTTTCTAAGCTTCACTCAGCAGAAACGCGCTGCTCTCTCCTGGAAAAACAGCTCAACTACATGAA

Function

GO:

id name namespace
GO:0005813 centrosome cellular_component
GO:0043015 gamma-tubulin binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-27 Predicted to enable microtubule binding activity. Predicted to be located in cytoplasm. Predicted to be active in centrosome. Orthologous to human CEP57L1 (centrosomal protein 57 like 1).

Ensembl:

ensembl_id ENSDART00000152984

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036879 lncRNA downstream 7649 32137025 ~ 32139068 (-) True XLOC_018188
TCONS_00035842 lncRNA downstream 101628 32016138 ~ 32045089 (-) True XLOC_018186
TCONS_00036878 lncRNA downstream 142315 31996190 ~ 32004402 (-) True XLOC_018185
TCONS_00036485 lncRNA downstream 162866 31981452 ~ 31983851 (-) False XLOC_018185
TCONS_00036877 lncRNA downstream 179506 31936024 ~ 31967211 (-) False XLOC_018185
TCONS_00036880 lncRNA upstream 114168 32263188 ~ 32269895 (-) True XLOC_018191
TCONS_00036881 lncRNA upstream 508066 32657086 ~ 32658262 (-) True XLOC_018197
TCONS_00036882 lncRNA upstream 1081143 33230163 ~ 33293844 (-) True XLOC_018200
TCONS_00036883 lncRNA upstream 1200154 33349174 ~ 33419013 (-) False XLOC_018201
TCONS_00036884 lncRNA upstream 1208954 33357974 ~ 33428878 (-) False XLOC_018201
TCONS_00035843 mRNA downstream 33899 32047385 ~ 32112818 (-) False XLOC_018187
TCONS_00035844 mRNA downstream 35835 32048581 ~ 32110882 (-) True XLOC_018187
TCONS_00035839 mRNA downstream 101535 32009271 ~ 32045182 (-) False XLOC_018186
TCONS_00035841 mRNA downstream 101660 32015773 ~ 32045057 (-) False XLOC_018186
TCONS_00035838 mRNA downstream 139508 31929377 ~ 32007209 (-) False XLOC_018185
TCONS_00035848 mRNA upstream 34809 32183829 ~ 32188897 (-) False XLOC_018190
TCONS_00035849 mRNA upstream 34884 32183904 ~ 32186886 (-) True XLOC_018190
TCONS_00035850 mRNA upstream 79190 32228210 ~ 32270866 (-) False XLOC_018191
TCONS_00035851 mRNA upstream 137745 32286765 ~ 32332736 (-) True XLOC_018192
TCONS_00035852 mRNA upstream 188502 32337522 ~ 32405440 (-) False XLOC_018193
TCONS_00035840 other downstream 135718 32010010 ~ 32010999 (-) False XLOC_018186
TCONS_00035824 other downstream 1101512 31045075 ~ 31045205 (-) True XLOC_018178
TCONS_00035814 other downstream 1771811 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035813 other downstream 1772633 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035812 other downstream 1773290 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035855 other upstream 311255 32460275 ~ 32460391 (-) True XLOC_018195
TCONS_00035856 other upstream 500823 32649843 ~ 32649959 (-) True XLOC_018196
TCONS_00035866 other upstream 1322201 33471221 ~ 33475485 (-) True XLOC_018202
TCONS_00035876 other upstream 1452393 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035878 other upstream 1507143 33656163 ~ 33686380 (-) False XLOC_018209

Expression Profile

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