RNA id: XM_021616033.2


Basic Information

Item Value
RNA id XM_021616033.2
length 3667
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC110532284
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49085824 ~ 49097702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCGGATGTTGATCAAGGATCGGTCTTACCCAGCGAAACTTCACCTCTCATTCTGGATGGCCTGAATTCTACCGACTCAAATGGTACGGACGCTGTCAACGCGACTGTGGCCAAGTTTGTGGCGACACCGGAGGGAACGGCACTGGCATATGGCAGCCTTGTTTTTATGGCTCTGTTGCCCATCTTCTTCGGTGCACTGCGATCAGTCAACTGTGGCAAAAGCAAGGTTGCTGGAGAAAATGGTTGCGATTATGAGTACAGAAACTCCTCAGACATGCCAGAGACCATCACAGGCAGAGATGCTGCACGGTTCCCCATAATCGCCAGCTGCACCCTCTTCGGCCTCTACCTCTTCTTCAAAATTTTCTCACAAGAGTACATCAACTTGCTGCTGTCAATGTATTTCTTTGTCCTGGGGATTTTGGCACTGTCTCATACAATGAGTCCCTTCATGAACAGGATCTTCCCTGCTAACATTCCCATCAAGCAGTACCAGCTGCTCTTCACTCAGGGCTCAGGAGAGACCAAAGAAGAAATTGTCAACTATGAGTTTGACACCAAGGACATGATCTGCCTGGTCATCAGCACTGTGGTTGGGGTCTGGTACATCCTCAAGAAGCACTGGATTGCCAACAACCTCTTTGGCCTGGCGTTCGCCCTGAATGGGGTGGAGCTTCTGCACCTAAACAATGTCAGTACTGGTTGCATCCTGCTGGGGGGGCTGTTTGTCTATGATGTCTTCTGGGTGTTTGGCACCAATGTCATGGTTACCGTGGCCAAGTCGTTCGAGGCACCCATTAAGTTGGTGTTTCCCCAGGACCTGTTTGAGAAGGGTCTAGGTGCCAATCAATTTGCCATGCTGGGTCTTGGAGATATTGTCATTCCAGGTATCTTCATTGCTCTACTCCTCCGCTTCGATGTCAGTCTGAAGAAGAACACCAGGACCTACTTCTACACCAGCTTCCTGGCCTACATCTTTGGCCTGGGTATGACCATCTGGGTCATGCACACCTTTAAACATGCCCAGcCTGCCTTGCTGTACCTGGTCCCAGCCTGTATTGGATTCCCGGTGGTTGTAGCTCTGTTGAAAGGAGAACTGACCGAGATGTTCAGGTACGAGGAAGTCTCTCCGGAAGACGCTGCAGCGAAAGAAGAGATCACAGAGGCTGAGAAAAAAGATAAATGACGACAGTTTCCAGAAACTCGTCCATCACTGGCTGCCACCACATTTCACATCAGCCCACCTCTCTACACGTTTCCCAAGTGCCGTGCTGTACAGGGAAACGGCTGGTTTATTAAGTAACTGTTTTGACATTGGGATATTTTGAAGTTCAAAAGTGGTTTGTTACACAAATTGTACAACAGCTTATCCGGTGTCTGTTTCttctatattttttgttgttattttatttgaaagGCCAGAATTTTAAAACGGAATAAGTGTTGTTGTttaggggaggggaaggggggggtTCTGCAATATCACAGGAAGCtgaacatgttttttattttaattttcagAAACATTTTACTCTCCCAGCCTGATTTATTTGCAATGATTGTCTAGTTTGATCTCTGTACCAAGTCCATTCTTGGTTTTGATATACAAATGCCTTTGTCATAGAGAATGTGAAGTATAATAGGATGGTGTTAGGGACGCGGGAGATGAGTTTACCATTGTGCCATACACGCTTCACATGGACGTTAACCCCATGGAACTCGACCGTTGGTATCTATATGAATGGCACCTGGCTTCTCTGGTCTGGAAGTCTTTGGCTTCAACAAAGACATCTAACTATGTACTACTGTACTAGTCTCAATGTATAATTGTGCCAATTTAGTCATGTGTGTAAGTACATGGTACCTGACATGTTAGTCAGTATAGTGGTAATAATAGCTCAAGAGTTCAGATCATAGCATTAAGAAGTAACTGAACTTGGGAAATCGATCACATTTTGATATTTTTATGCACATTTGCTATGACACTACTATTTACGTGAGTCATACTCTGTCATGTCAAATCAGAGAAGTCTGTTATATGGAAACTATGTTTAGTATTGTAGTTAGAGGTCCCATGCAGTGACTGAAATGTACCTGCAGGTGGAGACAGTGTCAAAAGAACCATGTCTCCTCAGAGAGGAGACCAAAGGACCAAATAATTCCTCCTCTTGCTTTAGGTTGTAAGTGCTTTGCTTTAATAATGTATTTTCTTTCTGGCCTTTTGCAGTTTGGCGCAGTGTGTTTCAGGTTCAGAAAGACAAGGGAGAAGCTTTTTCATTTTAGGGCTTTAAGATGGAGCAGTTTTGGTAAagatcatgtccacatcctgccTGGTGAAGTTCAGTAACCCTATCATTTTAAGAAATGTACTTTTTTCTCTTCTTTTTTTCTCCTATTGTACTTGTGCAAGTCAAAGTTTATGATTCTATGTTCAAGAACCGATATCTATTTTGTTTGCAATAAATGTGGGCGTATATCACCGTAGAGAACCATAACCAATGTGGGCGTATATCACCGTAGAGAACCATAACCAATGTGGGCGTATATCACCGTAGAGAACCATAACCAATGTGGGCGTATATCACCGTAGAGAACCATAACCAATGTGGGCGTATATCACCGTAGAGAACCATAACCAATGTGTGGGTCTTTTTCCTTACCCTAGTTGTACTGATGTCGACACACCCACACCTGGCTTATTGTGGTTAATTAACTGGTGATTATAAATACTATTGATAATCAATACTATAATCAGAACCCAATATGTAAGCTGTCAGTGAAACAAACCAGTTTACTGCATTCTCATCTGCAGGAGAGGCAGAGTGTAGTACACATCTGATGGAAAGAGGAAGGAGACTAGGATGATACGTCATACAGGTTCCGGTGTTTCTCATGGAACTCCAGCACCTGAAGCTGTGTCTTTGAGTCTCTGTTCCGTCCACAGTATACAGCTGCTGAGAGACCGGTGAAGGGTGACTGGCTGATTAGCAGGGGAACAAGCCTCTCAACTGTCGTTCTGAGCCGAGAGGAACTATCTGCAGTCTGTCCGCCAAACCTGTTAGTCTGAGAAGGACTGGAACAGACCATCAACATAAGAATGACGTTAAACAAACCACATTTGATCAAGGTGACAGTCTAGATTTCAGACATTGTGCTCCACTAAACTTGAACGTGACCTTTACATATATTTGTTTTCTGTTAGCACAGGACAGTGCTGCTTGGGTGGTAAAACTGCTGCAGAACCTGTTCAAACTCCTCCTCTCATGGCCATCCATAGTTCAGGTGAAagcagacagactggcagactgATCAAGAGATATGCAGATAGACAAACAAGCTGACAGGTATCTGGCGATGTGGATAGTGAGGGGGTGTAAAGGAATGACCAAGATGTCCCTCCTACAGTGTTAGAGGATAAGTGGTCTCAAGGGATCGTGTGATTGAGTGTAGATTGCAAAGATGCCACAAGGGGGTGGAGTAGTTCACTTCCACTGAACACTGATTTCAACGAGCATTGTTGGTGAACACTGAGGAGACTGGTTTTGAAGAGATAGTTCAGGAACACTGAGGAGAGAGGTTTGGAAGAGATAGTTGGGGAACACTGAGGAGAGAGGTTTTGGAGAGATAGTTGGGGAACACTGAGGAGAGAGGTTTGGGAGAGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU925056 lncRNA upstream 1142 49084917 ~ 49085116 (+) True G813128
TU925049 lncRNA upstream 3674 49082324 ~ 49082584 (+) True G813125
TU925023 lncRNA upstream 74310 49011646 ~ 49011948 (+) True G813100
TU925022 lncRNA upstream 74646 49011334 ~ 49011612 (+) True G813099
TU924998 lncRNA upstream 110873 48967764 ~ 48975385 (+) True G813076
TU925063 lncRNA downstream 5881 49103583 ~ 49103820 (+) True G813135
TU925065 lncRNA downstream 8276 49105978 ~ 49106213 (+) True G813137
TU925068 lncRNA downstream 17981 49115683 ~ 49116087 (+) True G813140
TU925088 lncRNA downstream 52761 49150463 ~ 49150752 (+) True G813160
TU925436 lncRNA downstream 60464 49158166 ~ 49158461 (+) True G813487
XM_036988219.1 mRNA upstream 5083 49063960 ~ 49081175 (+) False LOC110532283
XM_021616037.2 mRNA downstream 62745 49160447 ~ 49161689 (+) True LOC110532286
XM_021616036.2 mRNA downstream 65847 49163549 ~ 49167417 (+) False mrgbp
XM_021616035.2 mRNA downstream 65858 49163560 ~ 49167417 (+) True mrgbp
XR_005053453.1 mRNA downstream 86679 49184381 ~ 49186162 (+) True LOC118966186
XM_036988225.1 mRNA downstream 215484 49313186 ~ 49493787 (+) False sulf2b
TU924996 other upstream 79548 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 126267 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 515665 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 1103957 47982001 ~ 47982301 (+) True G812143
TU921250 other upstream 2950526 46134731 ~ 46135732 (+) True G809685
TU925067 other downstream 17435 49115137 ~ 49115618 (+) True G813139
TU927553 other downstream 1698512 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 1698618 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 1980745 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 2247670 51345372 ~ 51346494 (+) True G815767

Expression Profile