RNA id: TU927553


Basic Information

Item Value
RNA id TU927553
length 4168
RNA type TUCP
GC content 0.40
exon number 1
gene id G815428
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50796214 ~ 50800381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAACGATCAGACTGAGAATTTCAATGTCGAAAGGAGTCTCAGAGAAAtaaatgacaaaaaatatatttggagttattttcatgaaataaacaaacacagtgatgtattagacatacagtgatgatttaaaaatacaattaaaaacccTTTTAACATTGTGAAAATTAAATATACAAAAGTAGGCACAAGTAATTATGTAAAGGTAATCAACGAGGGGATATGCAGTCTATAGAAAATAATACACAACGTGGAAGGTGTGTGCCAAGGTGCGCAGCAGAGTGGCACTAACCTTCcacggagttgcattattttccatagaatgCATAGAGCTCAGGGTTGATTATCCCACTTATACCACGGCTATAATGCCTTTGTCTCTTTTCGACTCCTGACATGTTCATTACTATGAGACAGCTGGAGatagaatttgaatattgaaacaatgttgcaaatgtcagacagcaaggtttatacaaatctccgctgttgaaaacaaaatgttagtctaaaagaaatgtgagataatgtagtggagatcaagtttataaattgcttggcagggctgacgagacagtggattgagcagtcagatggaacagagtaaatacagttgtggccaaaggttttgagaatgacacaaatattaattttcacaaagtctgctgcctcagcttgtatgatggcaatttacatatactccagaatgttatgaagagtggtcagatgaattgcaattaattgcaaagtccctctttaccatgtaaatgaactgaatccccaaaaacagttatactgcatttcagccctgccacaaaaggaccagctgacatcatgtcagtgattattttgttaacacaggtgtgagtgttgacgaggacaaggctggagatcactctgtcatgctgattgagttcaaataacagactggaagctccAAAAAGAggatggtgcttggaatcattgttcttcctctgtcaaccatgtttAACTGCAAGGAAACaggtgccgtcatcattgctttgcacaaaaatggcttcacgggcaaggatattgctgccagtaagactgcacctaaatcaactatttatcggatcatccagaacttcaaggagagcggttcaattgttgtgaagaaggcttcagggcgcccaagaaagtccagcaagcgccaggaccgtctcctaaatttgattcagctgtgggatcggggtaCCACCAGAGCTTGCTTAGGAattgcagcaggcaggtgtgagtgcatctgcacgcacagtgaggcaaagacttttggaggatggcctggtgtcaagaagggcagcaaagaagccacttctctccaggaaaaacattagggacagactgataatctgcaaaaggtacagggattggactgctgatgactggggtaaagtaattttctttgatgaatcccctttccgattgtttggggcatacggaaaaaagcttgtccggagaagacaaggtgagcgctaccatcagccctgtgtcatgccaacagtaaagcatcctaaaaccattcatgtgtggggttgtttctcagccaagggagtaggctcactcacaattttgcctaagaacacagccatgaataaagaatggtaccaacacaacacagagcaacttctcccaaccatccaggaacagtttggtgacgaacaatgccttttccagcatgatggaccttgagtccatggccaggaatctccccagaccttaatcccattgagaacttgtggacaatcctcaagaggcgggtggacaaacaaaaacccacaagcattgattatgcaagaatgggctgccataagtcaggatgtggcccagaagttaattgacagcatgccatggtggattgcagaggtcttgaaaaagaagggtcaacactgcaaatattgactctttgcatcaacttcatctaattgtcaataaaagcctttgacacttatcaAATGCTTATAATTATACTTCAGTTTTCCAtattaacatctgacaaaaatatctaaagacactgaagcagcaaactttgtagaaattaatatttgtgtcattctcaaaacttttggccacgaatataggcattttaacatcatagatttagccggtggtaaatGGTGGAATAGACACCATTtacggttttaaccaatcagcattcacgaTTAGACCTTGTAGCCCACGCTATATTACCTCGGTAGAATTCGATGGctatagttcattcttacatgttcggtttgagctgcttttgaaagcaaaagtttaataaaaaaatgtataccagcaaatgaacacatttctagtggcaaATGTGCTAAATTATAGCCCTGGTATGAAAGGGATTATCAACTCTGGGTTTTCTGGAAAATAATCCGTGGAACACAACTTCCAGGTccttcattattttccatagaacgcaGAGCAACtcattgattatcccttacataatACACACTCTAGAATACAAGCCAATCAtaaacaagtattcaacaataCCGTGGTATAAAAAATGTTTATGCCTCATATCTGTTGACCTTTTCTAAGAAAGTAAAAACATAAGAAATCATGCATCGTTATTAATGATATATGTGTCTGCTGTCTACCTTTTCTTTTTAaagatatatatagtgtatttacagtaacagtcaaaagtttggacacacctactcattcaagggtttttctttatttttactattttctacattgtagaataagaaagacatctaaactatgaaataacacatggaaaaaGTAGCAACCAAAACATTGTTAAATCAAAATGCAAAAGTGCCTTGTTGaaaattaatttgtggaatttctttccttcttaatgcgtttgagccaatcagttgtgttgtgacaaggtaggcgtGGTGTGACGTGgtaaggttggacccaggtgcagagaagagaccagaaaaaacaacaaacactaagtATCGAAAATTCACTCAGGAAACAAATGCACAcggtaaacaattcaagcttctgcaaaggaccacagaaaacacacctctttaAGCAGGGACACAATGATGAAATAATAAGACACACCTGCCTCCCTCTGGTGCCAGGAGGAACCATGacaggtggtatacagaagatagcccatattaagtccatattatggcaagcacagctcaaattagcaaagagagacaacagtccatcattactttaagacataaaggtcagtcaaaactgaacatttcaagaactttgaaagtttattcaagtgcaagttcaaccatcaagcgctataatgaaattggctctcacgaggacctccacaagaaaggaagacccagagttacctctgcagcagaggataagttcattagagttaccagcctcagatagcAGCCTAAATAAAAGtcacagacacatcaactgttcagaggagaatcagtgtgaatcaggccttcatgatcgaattgctgtaaagaaaccactactaaaggacaccaataacaataaaagacttgcttgggccaagaaacacgagcaatggaaattagaccggcggatatctgtcctttggtctgatgagtccaaattggaggtttttggttccaaccgccatgttttgagacacagagtaggtgaacagatgacctccacatgtgtgattcccaccgtgaagcattgaggaggaggtgtgatggtgctttgtttgtgacacagtcagtgatttacttagaattcaaggcacacttaaacagcatggctaccattgcattctgcagcgatacgccatccaatctggtttgcgcttagtgggactatattttgtttttcaacagcacaGTGGCctaacacacatccaggctgtgtaagggctgtttgaccaagaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcaccgtacctcaacccaattgagatggtttgggatgagttggaccacagactgaaggaaaagcagccaacaagtgctcaacatatgtgggaactccttcaaagctgttggaaaagcattccaggtgaagctggttgagagaatgcaaagaacgtgcaagctgtcatcaaggaaaagggtggctactttgaagcatctaaaatagaaaatataatttgatttgtttaacagttttttggttactacagtacatgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU927550 lncRNA upstream 50 50795675 ~ 50796164 (+) True G815427
TU927549 lncRNA upstream 781 50795214 ~ 50795433 (+) True G815426
TU927546 lncRNA upstream 3243 50792739 ~ 50792971 (+) True G815423
TU927530 lncRNA upstream 22902 50773112 ~ 50773312 (+) True G815407
TU927527 lncRNA upstream 28002 50767984 ~ 50768212 (+) True G815404
TU927637 lncRNA downstream 99796 50900177 ~ 50900647 (+) True G815509
TU927644 lncRNA downstream 111963 50912344 ~ 50912554 (+) True G815516
TU927645 lncRNA downstream 113543 50913924 ~ 50914154 (+) True G815517
TU927654 lncRNA downstream 120485 50920866 ~ 50921079 (+) True G815526
TU927656 lncRNA downstream 122394 50922775 ~ 50923001 (+) True G815528
XM_036988244.1 mRNA upstream 238717 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988245.1 mRNA upstream 238717 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988246.1 mRNA upstream 238717 50445552 ~ 50557497 (+) True si:dkey-178k16.1
XR_005053279.1 mRNA upstream 239918 50445552 ~ 50556296 (+) False si:dkey-178k16.1
XR_005053278.1 mRNA upstream 368120 50423446 ~ 50428094 (+) True LOC118966068
XM_021616097.2 mRNA downstream 165336 50965717 ~ 51041645 (+) True cntn3a.2
XR_002474819.2 mRNA downstream 244034 51044415 ~ 51056932 (+) False exosc10
XM_021616098.2 mRNA downstream 244049 51044430 ~ 51056932 (+) True exosc10
XM_021616099.2 mRNA downstream 260691 51061072 ~ 51067904 (+) True srm
XM_021616100.2 mRNA downstream 305946 51106327 ~ 51107746 (+) True cort
TU925067 other upstream 1680596 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 1789504 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 1836223 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 2225621 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 2813913 47982001 ~ 47982301 (+) True G812143
TU927741 other downstream 278066 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 544991 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 1522890 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 1926040 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 3926490 54726871 ~ 54727376 (+) True G819897

Expression Profile