RNA id: XM_021616097.2


Basic Information

Item Value
RNA id XM_021616097.2
length 6873
RNA type mRNA
GC content 0.45
exon number 23
gene id cntn3a.2
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50965717 ~ 51041645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATATCCTGATCATTTTTACGCAGTGATGTCCCCACAGTTTTTCTGTCTGCTCAGATCTCTGGCGAAGACTGGCGCAGTTCTTTGGCTTCGGCAGGTGCGTCTGCCATACCGTTCCATCTTTTCTGCTTCTATCGTCTGCTTTAGCTACTTCACAGGGAATACGGAGACCTCCGCAAAATACTATTTTTAACATAATCTGCCAACATGAATGTGGCTCGGAGATAGGTCTGCGTTTGTGCTCATCTTTCGTACGGTTGCCGATTTGATTCATGAGCAAACTGTGTGGGTGTTGTTTTTGGGAAAGAGAAAACGACGTAGGCTATGAGACGCTTGCCTATTTAGTGCCTTCGTTCATTGCCTGTTTTTTCTTACACAGACTGTTTTTTTCTTACACTGACTGACCAGTGTTTCGGTTTAACCTGTATGAACGAGCTTGTGCTTCCGACATAAATCGGTGGAAAACGCGTCCGTGGCGGGTCAACTATTTATTATGGCTGAAAGAATTGAATTAGTGCACTGCTGGTCTGAATATATTTCAAGATAAGGAGAAAACGGCCGCTAGGTCAGGCCTGTCTGTTCCGGCGTTTAGAGCTTATTGAATGAAAGTCTTATTCGTCCTTCTCTGCCAAAGATGATGTTACCATGGAAACAGCTTCTTCTGCTATCAATCATCGACTGTCTCGCAGAATGTTTGGACAGTGGATCATTCCATGGTCCAAGATGGAGGATGGAACCCGGTGACTTGTTTATCCCTGTTGATTCTATGGAAGAGGAGGCCACTCTTACATGTGACGCTAAAGGAATCCCCCCTCCTCAATACAGATGGTCACTGAATGGAACTCTCATAAATCTGGAGTTGGACCACCGGCGTCGGTTGTCTGGGGGCAACCTCATCATAAGAAGTCTGGACCGCTACCAGGATGGGGGAAGGTATCAGTGTACAGCCTATAACACAATAGGAGCCGTTCTCAGCAGAAGAGCAAGCCTACAGTTTGCCTACTTGGATCATTTTAAACTCCACACAAGAAGTGCGGTGTCAGTTCGAGAAGGACAAGGAGTTGTGTTACTCTGTGGAACACCCACGTCCTCAGGAGACCTTAGTTATTCATGGGTCTTCAATGAATACCCATATTTCGTCCAGCAAGACAACCGGCGCTTCGTATCTCAGGAGACTGGCAACCTGTACATCGCCAAAGTGGAGCCCTCAGATGTGGGCAACTATACCTGTGTGGTGATGAACAGCATCACAAAGAGCAAAGTTCACAGCTCACCCACATCTCTGGTCCTGAGGAAAGACGGAGTAATGGGAGAATACGAGCCGAAAATAGAAGTTAATTTCCCCGACACCGTACCAGCAGCAAAAGGATCAGTGGTTACGCTGGAGTGTTTTGCTCTTGGGAACCCTGTCCCTGAGATTACTTGGAAGAGGGCTAATGGAGTCCCGTTCCCCAGCAAAGTGAAGATGAAGTACTCCAATGCCGTCTTGGAGATCCCCAGCTTCCAACAAGACGACACGGGGGGCTATGAGTGTGTGGCCGAAAACAAGATGGGGAAGAACATCGCTACAGGCCGATTGGCCTTCCATGCCAAACCTCAGTGGATTCAGACCATGAGAGACACAGCCCTGGCCATAGAGGAGAGGCTTCACTGGGAGTGCAGGGCCAACGGGAAGCCCAAACCCTCCTACAACTGGCTGAAAAATGGTCAAGTGCTGATCACTGAGGAGAGGGTCTACGTTGACAATGGGGTCCTGTTGATCTCGTCTTTGAACCTGTCTGATGCCGGGATGTACCAGTGTGTGGCTGAGAATAAATACGGTGTCATCTATTTCAGCACTGAGCTCATGGTTTTAGCCTCTTCTCCAGACTTCACTGGTAACCTGCTCAGAGCCCTGCTTAAAGCCAAGGCCGGCACCATAGTGACTCTAGAGTGTAAGCCCCAAGCCTACCCCACCGCTAGCATCCTGTGGAAGAAAGGCAACCAACCCATCCATACCAATGACAGAATCACTCTCTCTCCAGGTGGAACTTTGAGAATCACTAATGTGACCAAGTATGATGCAGGCAGCTACACCTGCTTTGCCAGAAACCGATTTGGGACCTCCAGCACCACTGGAAGACTCCTCATCACAGATCCAACAAGAATTACTCAGGGGCCAGTGGACATGGAGATCATAGTGGGTGAGAGCATCGTGCTGCCCTGCCAGATCGCCTGTGACCCTGTCCTTGATGTCTTCTTCACCTGGGCTTTCAACGGACAGCTCATCACCAAGACAGACAGGCATTTTGAGCTAGTGGGAGGGAGAACAGCTGGGGATCTGATGATCAGAAACATCCAGTTGAATCATGCCGGGAAGTACATCTGCGTGGTGGACACAGACGTGGAGAGCCTTTCAGCAGTGGCCATATTGATTGTAAAAGGCCCCCCTGGCCCTCCAGACACAGTGGCAGTGGAGGAGGTGAcggacagcacagcacagctcTCATGGAGCCGCGGCAGGGATAACGGCAGCCCCATCACCAGCTACCTCATCCAGACCAGGACCCCCTTCACTGTGGGCTGGCAGAGGGTGGACACAGTTCCTGAGGTAATTGATGGCAACACACTGACAGCCACGGTGGTGGATCTCAATGCCTGGGTGGAGTACGAGTTTCGAGTTGTGGCAAAGAACAGTGTGGGAGTGGGCGAGCCCAGTCCCACCTCCCTCCAGACACGGACAGAGGATGCAGTTCCTGATGCTGCACCCACTGATGTTGGAGGAGGGGGCGGCAGCAGATCAGAGTTGGTTGTTACATGGGAGCCTGTTCCCGAGGAACTGCAGAACGGTGAGAGCTTCGGTTACATTATCGCGTTCCGTGGCCTCGGTGAGATGACCTGGACCCACGTCGCCACCTCTGCTCCAGGGGCATCCCGCTATGTGTACCGGAACGACAGCATCGCTCCCTTCTCACCCTTCCACGTGAAGGTGGGAGCCTATAACAGCAAAGGGCAGGGCCCGTTCAGTCCTGTGGTCACCATCTACTCTGCAGAGGAAGAGCCGAGTGGTATGCCAGGGGGAGTTTGGGCCAGAAGTGTTTCCGCCTCAGAAATTGAAGTGAATTGGCAGGCTCTATCCTTTACTCCTGAAAGAGTTCTCGGCTACGAGGTGGTGTACTGGGAGGATGACACCAAGCCAGAGACGATGGGGAAAGTGAGGGTACCTGGGAGTCAAACATCGGTCACTGTTAGTGGCTTAGGGCGAAACACTCAGTATTTTCTCACAGTCAGCGCTTTCAACACAGCTGGTACTGGCCCTTTCCTCCCCGCCATCAACGCCACCACCAAGAAATCACCACCCGGACAACCTCCTCTAAATGTTGAGTGGACCTTGATTGGCTCCCAGATCACTATATACTGGGAGCCGGTGGTAGCCATGGAAACAGAGTCAGAGGTCACCGGTTACCAACTGTCTTACAGGAGTCTGAAACATAAGGAAGAGAACATGCTCTTGACAAACAATTCCACAGCCGAGCTGACCCTCGTTGACAATGAAGACTATGTCATCCACATAAGGTCGCTGAGCGAGGGAGGGCTTGGCCCAGCCACAGATCCCATCCGCATCCACAAACTAAGTATGAGTGCTCGAGGCTCGAAGGCCTGGAGTCTGAACACATCCCCTGTCTCTCTGCTCCTCAGCATCGCATTTTCAACATTCAGGTCTACATCGTGACAGAATGTCAGGCTACTATCTGGTTTACAGATCAAATAAGCTGTCTCTGCTCCATTCCAAATGACCCATCTACAATTATCATTTTTCTAACTGTGTGAAAGTAATGGTAGAGACCATCCATTTTGGAGGCAAGACAATAAGCGCATTCATTTGGGAATTTGTGAAgaaatttttgttgttgtttgggcACATGTTTTGATGAACATTGTGTTTGTTCAAGTGCTGTCAACTTCTGAAGGTATCTATTTGGATTGTACATTTTAGGTGGATGTTCAGATGAATGCGCTATTCTGACTTTTTGGAGCCCTGAATGATACAAATGCCTTACTTCCATTCATGTGCCAAAGTAGTTTGAATCGTTTAGTTGTAGGCTAAATGTTAAGCTAGCAATGCCATGCTTTTTTCCCCTTCATATTTTCATTTGTAATTAAACCATGTCACACTCAAAGCTAGTTATGAAAGTTATTACCTATGGTAATAATACTTGTCATTTAAACTTTCAAGGTTGCGATATGAAGTTGACTTTTGTAATTTTGACGTACTCTGAGGTGGTCATCGAAGCAAAAACTTTTACTGGTGTTTGGCTGAGCCAAGTTAAGTTCTCTTGCTTACTCATTGAGTAGACACAACCAtttgcctgtgcctgtgcctttGAAGATCTGTGTAAGAGTGTGACAAAGAAAATCACTTCACTTGACTTATAGTCAGTGTTGTGCAGCATTTCAGAGCTCTTTAAGTGATCATTATCGTATAATTATGTGCTACATGAAACCCATAAGACGAGAGCGGCTTGAGAGAGTGCAAGCCATTTTCtcaatgttttcattttgtcattgtgGTAGAGACTTGATTGTATCACGAGGGCTCCTTACAACTATAATGAGCCAAAATCTAAAAACTGACCTTACAGTGGATGGATAGATTGCATTTAATAGGAGGACTGTCTTTACCACACCTCACCCACTACCAATATGacacccacctgggtgatgcacggcagccattttgtgccagaGTGCTCGCCCGTTGCGTGGTGAAAATGGTGCCAAATGTGCCAGTCTGACATTGAAATTGAGCCACTAGCTGAGACCCAAGCAGACAACGTCATTCACCCCTAAGAAAATCCATGGAGCCTTACTGTATATGGAACTCATGCATGACATTGACTTATAGTCAGCTGTGTTAAATATGTACTAGACTTGCCTATCATTTGTTCAAGGTTCAATTAGCCTTTTCTTGAAacttatgtattgtattataggcCCTACATATTTTTCAGTGTAGCCTCAACTGCTCAGGTGTTCGGTCTTTTACACACCAACTTCACTGGTCATAAAGCAGAGAGCAGCTATATCAGACGGCTGACAGCACATGATACAGTGGTCTATTTAATGCTCTGACTTGACAAATGAAAAGTCTGATATCTGCCATGATTTAGCAGCAATTAAAACATATTAATAAATTAGAGTGAGCCTAGGGGCCTCTATGGGAAAGGGCATAGGACTAATGGTTCTATGACACCACAGAAGATTAATGTATCAGGATTCAGTGAGAGGAGCTAAATCAGAACGATTCCATCAGGATGGAaatatggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaatagatGCATATTACCGTGCTTCTCTGTGTGTCgcagatcaaatcaaactttatttgtcacataatgCCGAATAAAACAAgtttagaccttaccgtgaaatgcttacttacaagcccttaaccaacagtgcagttcaagaagagttaagaaaatatttaccaaattaactaaagtacaaaatgtaataaaaaaataataaaaagatgACGGTGTCTTTTGGAAGGCCAGTGAGTCATTTTTATAAAGCCCCAAATAATTTATTGTACTGGCAATCAAACATTTGGGAAATGTTTGTGCCCACTTTCAAATAGAATAACAACACCATGAAATTGCACATCTGCAATGGTGTAAACTGAGTTGTGTTTATTaagcaccaaatggaagaaaactaaCTCAAACatggagggactacctggactaaGAAAGGCTTCTTTTCACtacccattgcaaaatgttttccaTTGCGTGCCCTAATGCGCACGATCCAAGTTCAACCGATACGTTTAAAAAAGGCAACAGTTGTAAAGGGCTTTGTTGGATGATAAGATCATATCTCATTACCACTGCTGGCAACTTAAAGAGAGCTGTCTTTGAGTAATGTGTTTTTGTTGATATGCTTGTTTTCGTGGCTTTCTCGTGGTTCTGTACACTCTCAGTTTTATTTCATTACAAACCAACCAGTGTTTACAAAGAAACTGTATCTTTATGACTGATTTCAATGTTTAACTGATTAGAAACTCACAATATACAGTCTATGAACTTTGTGTCCTTGATGCAGAAAGGTCACCTCCATCTTTGTTTTGTAATGTATACAGTAAGTACTGTGGagatcttgtttttttttatgtttgattaTATGCTTTTTTAGTTTTGACAATTCTACACAAAGGTCAAGTGTTGCTTTAAAGAGATAAACATATAAGTTCTAACTTGTTTAGAAATACATTTTGATTGCTCTGTCGCTCCCATGTACTATGATATGGACCAATGCCCTCAAAGGGGTTTAAAACCGTGAAAGAAACTTTCATTTGATTTGTCTCCAAAATGCAATATTAATTTGGAATGCAATCCCCATTAAATTCAACAATTCTTAACTATACCAGAGTGATATTGTGACAATTTGGTCAACGGGCAGCAAAGTTTTCCCTTATGAATGGTACTAAGAAAACCGATCATCTGTTTTTTATAGCACTATATTTGTACAACATGATTCAAACTTATTGAGCTTGACTAATGCATTATTAAAAGGAAAGACTGACACCAAACAGTACTGTATAGTTAATTGGTCACCTATAATGCCAGTCTTTCGTGACAAAAAAGTTTAGGGGCTGTGGTTAGCAACACTTGGTCTTTATGTTTCACACTGCAGTATTAAAACAATGTTAAGTGATCTCCATGAGATTGTATCAAGAATGTTTTCACGATGAAAAGTAATTGGCTGATCTTGTATACTGAATCTGTGCATGTACAATATTGTTTGGTGCATTTATGTTTTCTAAAACAAAAAATTAAAGGAAAACGATTTACAGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU927681 lncRNA upstream 11293 50953753 ~ 50954424 (+) True G815552
TU927672 lncRNA upstream 19962 50945412 ~ 50945755 (+) True G815543
TU927665 lncRNA upstream 27500 50938008 ~ 50938217 (+) True G815536
TU927656 lncRNA upstream 42716 50922775 ~ 50923001 (+) True G815528
TU927654 lncRNA upstream 44638 50920866 ~ 50921079 (+) True G815526
TU927742 lncRNA downstream 37911 51079556 ~ 51088643 (+) True G815611
TU927760 lncRNA downstream 55717 51097362 ~ 51097596 (+) True G815629
TU927761 lncRNA downstream 56134 51097779 ~ 51098009 (+) True G815630
TU927774 lncRNA downstream 76455 51118100 ~ 51118396 (+) True G815643
TU927873 lncRNA downstream 217264 51258909 ~ 51264781 (+) True G815734
XM_036988244.1 mRNA upstream 408220 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988245.1 mRNA upstream 408220 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988246.1 mRNA upstream 408220 50445552 ~ 50557497 (+) True si:dkey-178k16.1
XR_005053279.1 mRNA upstream 409421 50445552 ~ 50556296 (+) False si:dkey-178k16.1
XR_005053278.1 mRNA upstream 537623 50423446 ~ 50428094 (+) True LOC118966068
XR_002474819.2 mRNA downstream 2770 51044415 ~ 51056932 (+) False exosc10
XM_021616098.2 mRNA downstream 2785 51044430 ~ 51056932 (+) True exosc10
XM_021616099.2 mRNA downstream 19427 51061072 ~ 51067904 (+) True srm
XM_021616100.2 mRNA downstream 64682 51106327 ~ 51107746 (+) True cort
LOC110531197 mRNA downstream 83490 51125135 ~ 51127512 (+) True LOC110531197
TU927553 other upstream 165336 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 165336 50796320 ~ 50800381 (+) True G815428
TU925067 other upstream 1850099 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 1959007 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 2005726 48959749 ~ 48959991 (+) True G813071
TU927741 other downstream 36802 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 303727 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 1281626 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 1684776 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 3685226 54726871 ~ 54727376 (+) True G819897

Expression Profile