RNA id: XM_021616099.2


Basic Information

Item Value
RNA id XM_021616099.2
length 2126
RNA type mRNA
GC content 0.39
exon number 8
gene id srm
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 51061072 ~ 51067904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgccaaccACCGATAAAACCACCGAAGAAGATACCAAAGCGAAGAAGGCATGCTACACGCCCCAACGTGGTTCACAGCTCAGTCAGATTTATTTTGAATGAAACATtaacaaatattttttgtttgttactaTAACGAACTGTAAACTTTGACTGCATCAATAATGGACAGCATAAAAGACGGATGGTTCACAGAAACGTGTACGTTATGGCCTGGACAAGCGATGAGTCTGCAAGTAGAAGAGGTTCTTTACCAACAAAAATCTAAATTTCAAGATGTCATGGTTTTCAGGAGCAAAACCTATGGAAATGTACTTGTGCTGGATGGAGTTATTCAatgcacagagagagatgagtttTCCTACCAAGAAATGATAGCCAACCTACCTCTGTGCTCCCACCCTTGCCCCAAAAAGGTCCTGATTATTGGTGGAGGAGATGGTGGCGTCCTGAGAGAAGTGGTAAAGCATCCACTTGTTGAATCAGTGGTTCAGTGTGAAATCGATGAGGATGTAATCAATGTGTCGAAGAAATACCTCCCAGGTATGGCGCAAGGGTTCTTCAGTCCCAAACTCACTCTGAATGTTGGGGATGGATTTGAGTTCATGAAACAGAACCAGGATGCCTTTGACATCATTATAACAGATTCATCTGACCCTGTTGGGCCTGCTGAGAGTTTGTTCAAAGAGTCTTATTATGAACTAATGAAGACAGCCTTACGAGATGGTGGAATTCTTTGTTGCCAAGGAGAGTGTCAATGGCTCCACTTGGAGCTGATTAAAGAGATGCGGACCTTCTGCAAGACACTGTTCCCAGTGGTAGATTATGCCTACTGCACCATTCCCACCTACCCAAGTGGTCAGATTGGCTTCATGCTGTGCAGTAAAAATGCTCAAACCACTTTCAGAGATCCAGTGAGAGAACTATCAACAAATGAGGTGGAAAGTATGAACCTGAGGTATTACAACCCGGAGATCCACAGAGCATCGTTCATCCTCcctgagtttgcaagaaagGTACTGAGTGAAGCATGAGTGGCATGATGAACAAAATCTTAATCCTTGACCTGATTCTCTCTGGCAACAGAAGCAACACAAGAGCTGCTACGCCTCTTTTCTCAGTCTCCACCAGGAAGGAAAGACCTTCAGTGGGCAATTCTGTTCCTTTCAGAGAGTATTAATTCCTTCCAGTGCTTCCTTCCAGTCTTACaaactatttgtatttatttgttctGGAATTTGTCATGTCTTGATTCTTAAATGGTAATCACTTATGTCAACATCTAGTTGGAAAATGAGGTGGGATGGAAAACATTCATACCCTACTCTTTGGAGCAATGTGATTCTAACACATTAGTATGGATTTAATCATAGTACTTGGTTGTATAAATACCAGATTACCTCTTAAGATTAAGGTACACGCAATTGCAAAACATGCCCACTCTGGTTTAAAGAAAACCGATACAAAAGTATTCCTCTTCGCACCTCTTCGTCAACTCATTCACCCAAATAATTCAAGATGATCCAATAGTGCCTGGATTGTGTTTTTCCATTACAGTAGGAAACATTTGTTGAAGTGGTTTCTATCATAGTTTACCTCCAGGCAGACGAATGGTATGATTTTTATAttggttgaaaatgtattatctGCCACAATGGAAAAGCTCAGGTCAGAAGTTGAGTTGAGAACAttaccactttaaaatgtcaacaGAAGTGTTGATTGTTTCCTATATAACACTTGTTTAGATATAGTTTATTCACCAATGGAGATGAAGTTACATGTGTAAGTTGATTGAATGCTGATGATGTACTGCACATCAATTTAGTTGGTTTCTTATCCTTTGCTATTCAATCCCTCTATTTGGTACTATATGGTTGTTGATCTAGTATGGAATAATCCAGAATACTGATGTCAAAATTATGCCTTTTGGTTTTTATTTCTTGGGGACCTGATTTGTTATGAACTTAGGTGTGAAATATTGAGAACTATAGATCTCCATGGAGTACGTATCAGTAGTGCATCCATACTAAACCTATGTCCAAGGCAATGGTGTTACACATGAACATTAAGATCATGTTTTttataagaatgatgaaatataATAAATCTAAGGTAAACTGGA

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00797 speE, SRM, SPE3; spermidine synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU927710 lncRNA upstream 44291 51015307 ~ 51016781 (+) True G815580
TU927681 lncRNA upstream 106648 50953753 ~ 50954424 (+) True G815552
TU927672 lncRNA upstream 115317 50945412 ~ 50945755 (+) True G815543
TU927665 lncRNA upstream 122855 50938008 ~ 50938217 (+) True G815536
TU927656 lncRNA upstream 138071 50922775 ~ 50923001 (+) True G815528
TU927742 lncRNA downstream 11652 51079556 ~ 51088643 (+) True G815611
TU927760 lncRNA downstream 29458 51097362 ~ 51097596 (+) True G815629
TU927761 lncRNA downstream 29875 51097779 ~ 51098009 (+) True G815630
TU927774 lncRNA downstream 50196 51118100 ~ 51118396 (+) True G815643
TU927873 lncRNA downstream 191005 51258909 ~ 51264781 (+) True G815734
XR_002474819.2 mRNA upstream 4140 51044415 ~ 51056932 (+) False exosc10
XM_021616098.2 mRNA upstream 4140 51044430 ~ 51056932 (+) True exosc10
XM_021616097.2 mRNA upstream 19427 50965717 ~ 51041645 (+) True cntn3a.2
XM_036988244.1 mRNA upstream 503575 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988245.1 mRNA upstream 503575 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_021616100.2 mRNA downstream 38423 51106327 ~ 51107746 (+) True cort
LOC110531197 mRNA downstream 57231 51125135 ~ 51127512 (+) True LOC110531197
XM_021616101.2 mRNA downstream 105858 51173762 ~ 51181734 (+) True masp2
XM_021616103.2 mRNA downstream 134829 51202733 ~ 51319382 (+) False pex14
XM_036988251.1 mRNA downstream 134857 51202761 ~ 51319382 (+) True pex14
TU927553 other upstream 260691 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 260691 50796320 ~ 50800381 (+) True G815428
TU925067 other upstream 1945454 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 2054362 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 2101081 48959749 ~ 48959991 (+) True G813071
TU927741 other downstream 10543 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 277468 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 1255367 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 1658517 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 3658967 54726871 ~ 54727376 (+) True G819897

Expression Profile