RNA id: TU927654


Basic Information

Item Value
RNA id TU927654
length 214
lncRNA type intronic
GC content 0.44
exon number 1
gene id G815526
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50920866 ~ 50921079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttggtacccttccccagatctgtgccatgacacaatccagtctcggagctttacggacaattccttcaacctcatggcttggcttttgctctgacatgcactgtcaactgtgggaccttacatagacagttgtgtgcctttccaaatcatgtccaatcaattggatttaccacaggtggaatccaatcaagttgtagaaacatctcaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU927645 lncRNA upstream 6712 50913924 ~ 50914154 (+) True G815517
TU927644 lncRNA upstream 8312 50912344 ~ 50912554 (+) True G815516
TU927637 lncRNA upstream 20219 50900177 ~ 50900647 (+) True G815509
TU927550 lncRNA upstream 124702 50795675 ~ 50796164 (+) True G815427
TU927549 lncRNA upstream 125433 50795214 ~ 50795433 (+) True G815426
TU927656 lncRNA downstream 1696 50922775 ~ 50923001 (+) True G815528
TU927665 lncRNA downstream 16929 50938008 ~ 50938217 (+) True G815536
TU927672 lncRNA downstream 24333 50945412 ~ 50945755 (+) True G815543
TU927681 lncRNA downstream 32674 50953753 ~ 50954424 (+) True G815552
TU927691 lncRNA downstream 86279 51007358 ~ 51069498 (+) True G815561
XM_036988244.1 mRNA upstream 363369 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988245.1 mRNA upstream 363369 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988246.1 mRNA upstream 363369 50445552 ~ 50557497 (+) True si:dkey-178k16.1
XR_005053279.1 mRNA upstream 364570 50445552 ~ 50556296 (+) False si:dkey-178k16.1
XR_005053278.1 mRNA upstream 492772 50423446 ~ 50428094 (+) True LOC118966068
XM_021616097.2 mRNA downstream 44638 50965717 ~ 51041645 (+) True cntn3a.2
XR_002474819.2 mRNA downstream 123336 51044415 ~ 51056932 (+) False exosc10
XM_021616098.2 mRNA downstream 123351 51044430 ~ 51056932 (+) True exosc10
XM_021616099.2 mRNA downstream 139993 51061072 ~ 51067904 (+) True srm
XM_021616100.2 mRNA downstream 185248 51106327 ~ 51107746 (+) True cort
TU927553 other upstream 120485 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 120485 50796320 ~ 50800381 (+) True G815428
TU925067 other upstream 1805248 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 1914156 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 1960875 48959749 ~ 48959991 (+) True G813071
TU927741 other downstream 157368 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 424293 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 1402192 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 1805342 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 3805792 54726871 ~ 54727376 (+) True G819897

Expression Profile