RNA id: TU927530


Basic Information

Item Value
RNA id TU927530
length 201
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G815407
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50773112 ~ 50773312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaattcatgttagcaggcaatattaactaaatatgcaggtttagaaATATATATTTGTGCATTGatattaagaaaggcattgatgtttatgggtaggtacacattggtgcaacaacagtgcttttttcgtgaatgcgcttgttaaatcacccgtttggcgaagaaggctgtgattcaatgataaattaacaggcaccgcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU927527 lncRNA upstream 4900 50767984 ~ 50768212 (+) True G815404
TU926718 lncRNA upstream 207717 50473415 ~ 50565395 (+) True G814639
TU926758 lncRNA upstream 279678 50490000 ~ 50493434 (+) True G814678
TU926680 lncRNA upstream 335846 50437037 ~ 50437266 (+) True G814631
TU926677 lncRNA upstream 338174 50434723 ~ 50434938 (+) True G814628
TU927546 lncRNA downstream 19427 50792739 ~ 50792971 (+) True G815423
TU927549 lncRNA downstream 21902 50795214 ~ 50795433 (+) True G815426
TU927550 lncRNA downstream 22363 50795675 ~ 50796164 (+) True G815427
TU927637 lncRNA downstream 126865 50900177 ~ 50900647 (+) True G815509
TU927644 lncRNA downstream 139032 50912344 ~ 50912554 (+) True G815516
XM_036988244.1 mRNA upstream 215615 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988245.1 mRNA upstream 215615 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988246.1 mRNA upstream 215615 50445552 ~ 50557497 (+) True si:dkey-178k16.1
XR_005053279.1 mRNA upstream 216816 50445552 ~ 50556296 (+) False si:dkey-178k16.1
XR_005053278.1 mRNA upstream 345018 50423446 ~ 50428094 (+) True LOC118966068
XM_021616097.2 mRNA downstream 192405 50965717 ~ 51041645 (+) True cntn3a.2
XR_002474819.2 mRNA downstream 271103 51044415 ~ 51056932 (+) False exosc10
XM_021616098.2 mRNA downstream 271118 51044430 ~ 51056932 (+) True exosc10
XM_021616099.2 mRNA downstream 287760 51061072 ~ 51067904 (+) True srm
XM_021616100.2 mRNA downstream 333015 51106327 ~ 51107746 (+) True cort
TU925067 other upstream 1657494 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 1766402 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 1813121 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 2202519 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 2790811 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 22902 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 23008 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 305135 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 572060 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 1549959 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile