RNA id: XM_036988309.1


Basic Information

Item Value
RNA id XM_036988309.1
length 3896
RNA type mRNA
GC content 0.54
exon number 17
gene id LOC110532370
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52750213 ~ 52787156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCACACCCCCTCCCTATAAGGAATTGATGACATTCCAACAGGCGGGGGTTGATGACCTCCTCATTTGTGAATGACGCTTCCGCGAGCTCAGCGTTCAGTTGAGCAACTAATGTGAGTGTTGAAGTATCCCAACCTAGCctagaaataagaagaacacttTCCCAAATGGATCCCCGTGGAATTAAGCTCTTGTTGTTTTCCTATGTATTAATTAGCTTTATATTTATTACACTGCAAACTAAAGAAGAGGTGCTGTTGGATATGAGGGCATCAGGGAGTGAGCTAGGCTGGCTGACCGGGCCATATGAACAAGGAGACACGCAAGGGTGGGAGGTGGTCCAGAGGACTCTCAACGGCTCACAGTTCTATACCTACTCGGTGTGTAACGTGGGCGAGCGTGAGCAGGACAACTGGCTGCGCACCACCTTCATccagcgccgcccgtcagccTCTAGAGTCTTCGTGGAGCTGCAGTTCATCGTGCGTGACTGCAACTCGTTCGACGGCTCATCGCTTACCTGCAAGGAGACCTTCAACCTGTTCTCCTCTGAGTCGGACGCTGATATCGGCACCAACTTCCGCAAGGGCCAGTTCAAGAAGGTGGCAACCATCGCACCCGACGAGATCACCAGCCGCAATGAGCTGCACATCAACACAGAGACGCGGGTGGTGGAGAGCCTCAgcaggaaagggttctaccttgcCTTCCAAGACATCGGGGCCTGTGTGGCGCTGCTCTCTGTCAGGGTCTACTACAAGACCTGCCCGGCCACTGTCAAAAGCCTGGCAGCCTTCCCCGAAACAGTGGCAGGGGGGGGGGAGAACCAGGCCCTGAGGGAGGTGGCGGGGGGCTGCGTAGAGAATGCTGTGAGCGAGGAGACGCCCCGCATCTACTGCACGGTGGATGGAGAGTGGGTGGTGCCCGTCGGACAGTGCCAATGCAGGCCCGGCTACGAGGCCGTCAACGGCACATGCCGAGAGTGTCAGCCAGGCTTCTTCAAAGCCTTCGTGCCCAGCGACACGTGCAAACTATGTCCTGCTAACACCCAGCTGCTGGGCTCCGGGGCGCTGCTCTGCCCATGTGCAGAAGGCTTCTACCGCGCTCCCGACGACCCAGCAACAGGGCCCTGCTCAGGCCTGCCCTCAGCGCCGCAAGAATTGTTCGCCACGACCACCCAGCTGGCCGCAGGCAAGCTGCATCTGTCATGGAGCCCGCCGGAGGACACGGGCGGCCGTAGTGACATCACCTACAGTGTGGAGTGTAGATGCTGTGATGGCGCCACGTGCCAGCCGTGCGGGGAGAAGGTGCGCCTCGAGCCAGCCAGCAAGGGCCTGATGCACACCTGGGTGGCGGTGAGCGAGCTGGAGCCCCACCTCAACTACACTTTCACCGTGGAGGCCCACAGCGGAGTGTCGCTGTTTGCCAGCCAGGTGGCACCGCGCTCCAACAGGCCCCCGTCCACAAGCACATTGACCACTGCCCTGCACTACACAGACCCCCCCAAGGTGACGTCCATGCGTCTGGTCGAGCGAAGCCCCACCAGCCTTTCCCTGTCCTGGGCTGTAGCCCCCCACAGGCCCCTGCCCCGGCCCACCCGCTACGAACTCAGCTACCGCAAGAAGGATGACAATCTGGATGTGACCACGTACACTGTTCTGATTCTGGAGAAGAGCTCTGTGCAGATCAGTGAATTGTCCCCAGCCACGGCTTACCTATTCAGGGTCAAGGCCCTGAGCCCCGAGGGCAGCCCTGGAGGATCCTTGGAGGATGAATTTGAGACCCTGCCTGATATGCCCCAGAGCAACACAGCGGTCATCTTCGGAGCGGCAGTTGGCGGAGCGGCCATGTTGTTCATTGTGGTGGTCGTCCTGCTCGTACGCAAACGGAGAAGGAACTCCCATACAAGACAAGAACCAGAAGATACTTACTTCTCTAGCTCAGAGCAACTGAAGCCGCTAAAGACCTATGTGGATCCGCACACGTATGAGGACCCCAACACAGCCATCCTCAAGTTTGCCAGCGAGATCCATCCCAGCCACGTGACCAAGCAGAAAGTCATTGGAGCTGGGGAATTTGGAGAGGTGTTTCGCGGTATTCTGAAAGCGCCAGGGCGGAAGGAAGTGGCGGTGGCCATTAAGACGCTGAAGCCGGGATACTCGGAGAAGCAGAGGCAGGACTTCCTTTCAGAGGCAAGCATCATGGGACAGTTCTCCCACCAGAACATTATTCGCCTGGAGGGAGTCGTCACCAAATTCAAACATGCCATGATTGTGACTGAGTATATGGAGAACGGAGCACTGGACAAGTACCTAAAGGATCACGATGGCGAGTTGCCCTCCTTCCAGCTGGTGGGCATGATGCGTGGCATCGCCGCAGGCATGAAGTATCTTTCCGACATGAGCTACGTTCATCGGGATCTGGCTGCCCGCAACATCCTGGTCAACAATAACCTGGAGTGTAAGGTGTCTGACTTCGGCCTGTCCCGAGTGCTGGAGGACGACCCTGAGGGCACCTACACCACCAGTGGTGGTAAGATCCCCATCCGCTGGACAGCCCCAGAGGCCATTGCCTACAGGAAGTTCACCTCGGCCAGCGACGTGTGGAGCTTCGGCATTGTCATGTGGGAGGTCATGGCCTTTGGCGAGCGGCCCTACTGGGACATGAGCAACTGCGAGGTAATGAAGGCCATCAACGAGGCGTTCAGGCTGCCGGCGCCCATGGACTGCCCATCAACCGTCTACCAGCTCATGTTGCAGTGCTGGTTGCAGGAACGCTCCAAGAGGCCCCGTTTCCCGGACATTGTCAGCCTGCTGGACAAGCTGCTCAGGAGCCCTGAGTCCCTGAAGGCAATCGCAGATTTCGACCCCCGCGTATCCATCCGCCTGCCCAGCACCAGTGGTTCGGATGGCTCACCCTTCAGGTCGGTGTCCGAGTGGCTGGAGTCCATCAAGATGAGCCAGTACAGTGAGAACTTCACCTGTGCCGGAGTGTTCACCATGGACCAGGTGCTGCAGATGAAGAATGAGGATATCAAGAACATTGGCGTAAGACTGCCCGGCCACCTGAAGAGAATTGCATATAGCATCCTGGGCTTGAAAGACCAGACCAGCACCCTGAGTGTATTTGCAGTGTGACTCAATACTAGTGGTACAGGAATTTGAATCGACACTAAAGCGGGCAACACTCTGACTGAATATTGAACTCTGTGTTGGACTGGACTGGAGCGGAGCTGCGGGAACGGCTTTGGACAGGCAGAACCAAACTGAACACGTCGTAGGAACATGGTCCAGCCAAAAGAGACTGACATATTGTACATTCTTGGAGATTTGTAACAGACTTGTTAAGTGATTGCTAATATTTTTGAATTTATACAGcaatagatgtattaattagactgtgtatattatactgtatatattttttattatccaTCTGTATTTGTACAGATACAGTTCATTGCTCAAtctttgttttatatatttttgggaTGCATGCTTCCATCTCTAGCACCCAATATTGAGAAGAGAAAATGAAAAAAGTGACACAACCACTTATACGTAGTTCAACTAATATGATTCTTTGTGTGACGTGGACTGCTGTGCCCTTTTCGGAATGAGTCTGGTGTTGCCGATGCCATTGCAATTCACTGAGTGAAATGCATTCTGGTCGGCGTAATCTCTTGCTAAACTAATGAAAATGGACTCGAAGCAGAGAGTGGACCTGAAAGGGGCTGGCCATAGGTTAACATGGGGCACTGGTATATGCCAGTCTTGAGGTTATTGTCTTAAAGTCCAGGTTGGGCTGTTGTTGGCTACTGTTATGCCTAATGTGGGCTTAATTCAGATGTTAAGCTATCATATGAATTTGAGTTTATATAAAAACAGTGTGAAAAGA

Function

GO: NA

KEGG:

id description
K05103 EPHA2, ECK; Eph receptor A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929233 lncRNA upstream 89167 52660742 ~ 52661046 (+) True LOC110532366
TU929229 lncRNA upstream 95287 52654659 ~ 52654926 (+) True G817021
TU929223 lncRNA upstream 103057 52646934 ~ 52647156 (+) True G817016
TU929195 lncRNA upstream 153174 52596812 ~ 52597039 (+) True G816989
TU929194 lncRNA upstream 153629 52595984 ~ 52596584 (+) True G816988
TU929442 lncRNA downstream 245983 53033139 ~ 53033358 (+) True G817215
TU929448 lncRNA downstream 250973 53038129 ~ 53038474 (+) True G817221
TU929449 lncRNA downstream 252359 53039515 ~ 53040495 (+) True G817222
TU929553 lncRNA downstream 468155 53255311 ~ 53256967 (+) True G817307
TU929516 lncRNA downstream 480784 53267940 ~ 53268576 (+) True G817278
XM_021616211.2 mRNA upstream 15284 52692676 ~ 52734929 (+) False LOC110532368
XM_021616212.2 mRNA upstream 15284 52692676 ~ 52734929 (+) False LOC110532368
XM_021616213.2 mRNA upstream 15284 52692676 ~ 52734929 (+) False LOC110532368
XM_021616214.2 mRNA upstream 15284 52692676 ~ 52734929 (+) False LOC110532368
XM_036988308.1 mRNA upstream 15284 52695913 ~ 52734929 (+) False LOC110532368
XM_021616219.2 mRNA downstream 29553 52816709 ~ 52833078 (+) False LOC110532371
XM_021616220.2 mRNA downstream 29554 52816710 ~ 52833078 (+) True LOC110532371
XM_021616222.2 mRNA downstream 67679 52854835 ~ 52859251 (+) True LOC110532373
XM_021616223.2 mRNA downstream 72460 52859616 ~ 52912527 (+) False LOC110532374
XM_021616224.2 mRNA downstream 72461 52859617 ~ 52912527 (+) False LOC110532374
TU929242 other upstream 22693 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 424573 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1403719 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1671271 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1949832 50796214 ~ 50800381 (+) False G815428
TU932380 other downstream 1939715 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2446102 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 2743881 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 2910484 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 3186886 55974042 ~ 55975316 (+) True G821363

Expression Profile