RNA id: XM_021617162.2


Basic Information

Item Value
RNA id XM_021617162.2
length 1410
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110533035
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67905031 ~ 67911226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttaatcagaaaaccaggtgttttaatcagTATGTTTACTTTGATATTGACCTTACATCGATTATGATAAGCAGAGTAAAGGTGTTTACTTTTGCCATACTCGGCCTACTGTGATAATCTGTTTCATATGTGATCAGTAGTGCGCATGCTTGACCTGCATAACTTTCAACTGAAATTTACATTCTACATTTCCATTATTCTGCGATGGTGATGACAGCATGCGGACAGCGGCCATTGGCAGACGCTCCAGGAGGGTCACGTGTTGTTGGAGGGCGCAATGCACCTTTGGGTGCATGGCCTTGGCAGGTCAGCGTGCAGGTGAGGTCCTGGCACCTCTGTGGCGGGACCATCCTCAACAGCCTCTGGGTGCTCACCGCTGCACACTGCTTCACTATCGTTCCACCCCATAGGAGGTCCAGTCTGCGCGTGGTGGCAGGACTCAACGTGCTAACAGAACCAGGGCAGTACTCCCAGCGCCGCTATGTTGTGGAGGTCAGAGCCCATGAGAAGTTCCACCACCCCAGCTACTCCAACGACATAGCTCTTCTGCGTCTCAGCTCTCCACTGGAGTACACAGACTTTGTCCAGCCTGTCTGTACAGTGGAAGACGAGATGGAGGAGTTCAACTTAAACCTCAACCAGTGTTTCATCAGTGGTTGGGGCAGCACTTCTTTCAAAGGAAAGCCAATGGACACACTGCAAGAAGCTGAGGTGGAGCTGTTTGAGCGAAATACTTGCAACCAGATCGACTGGTACAACGGTTACATCAAGAATGGCATGATCTGTGCTGGCTCTGAGACCGGGGGGGTCGACACATGTCAGGGAGACAGTGGAGGTCCACTCCAGTGCTTCAGTGAGGATCAGGAAAAATTCTACATTGTTGGCGTGACAAGTTTTGGGGATGCCTGCGGATTGCCTAAAAGACCCGGAGTGTATACTATGGCCAGCAAGTACTCAGCCTGGCTGAAGACAACTCAGTCAAGATCCCTGTCAGCCGTCTGTCAGCTAGATAACCATTTCATCTTAGTCCTGTCCAGTGTAGTTTCTAGACTTATCTGAATGAGGTGAACTGCTGAATCTAGTCCAGTGTTTGACATAAACTACTCTCTCATGGATGGTCATTACATTTTGATGACTTTACATTGTCAATAGTTCTGTCACTTCTCAGGAGTAGCCTAAATAAACCATATTATTCAAAGGCTCTGTAGGCTATATTTGATGGGTCATTTCAACAATTTAATGATTGTTGAAGGATAAACCTGTGAAATGCCAAAAGGCCATTGTTTCCACTGTCTTACTTTATCATAGTAGCCCATTAAAACATTAGCTAGGCCTTAAGGAACATGAAATTAAATGTTGTAGCATACTAATAATTTCTTGAGAGaattctatactattatattccTTG

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU948455 lncRNA upstream 96168 67806698 ~ 67808863 (+) True G833972
TU948437 lncRNA upstream 140092 67764718 ~ 67764939 (+) True G833959
TU948433 lncRNA upstream 149735 67754984 ~ 67755296 (+) True LOC110532731
TU948434 lncRNA upstream 151539 67753077 ~ 67753492 (+) False LOC110532731
TU948431 lncRNA upstream 155863 67748960 ~ 67749168 (+) False LOC110532731
TU948591 lncRNA downstream 128523 68039749 ~ 68040023 (+) True G834092
TU948594 lncRNA downstream 131909 68043135 ~ 68043342 (+) True G834095
TU948599 lncRNA downstream 136516 68047742 ~ 68047960 (+) True G834097
TU948600 lncRNA downstream 136976 68048202 ~ 68048403 (+) True G834098
TU948607 lncRNA downstream 145890 68057116 ~ 68057343 (+) True G834105
XM_021617161.2 mRNA upstream 132195 67768340 ~ 67772836 (+) True LOC110533034
XM_021616844.2 mRNA upstream 149916 67718177 ~ 67755115 (+) False LOC110532731
NM_001124524.2 mRNA upstream 279054 67622423 ~ 67625977 (+) True tebp
XM_021616841.2 mRNA upstream 286917 67607679 ~ 67618114 (+) False LOC110532729
XM_036986966.1 mRNA downstream 11431 67922657 ~ 67934517 (+) True LOC118965940
XM_036988805.1 mRNA downstream 188467 68099693 ~ 68111105 (+) True LOC110532736
XR_005053457.1 mRNA downstream 298953 68210179 ~ 68212326 (+) True LOC110533037
XM_021616861.2 mRNA downstream 301976 68213202 ~ 68218960 (+) False fance
LOC110531252 mRNA downstream 346494 68257720 ~ 68258742 (+) True LOC110531252
TU948379 other upstream 283665 67620878 ~ 67621366 (+) True G833906
TU947931 other upstream 691147 67213420 ~ 67213884 (+) True G833541
TU947547 other upstream 970544 66931688 ~ 66934487 (+) False G833241
TU948601 other downstream 137687 68048913 ~ 68049222 (+) True G834099
TU948716 other downstream 305852 68217078 ~ 68218941 (+) False fance
TU948718 other downstream 305852 68217078 ~ 68218941 (+) True fance
TU948760 other downstream 356811 68268037 ~ 68268408 (+) True G834228
TU948768 other downstream 375989 68287215 ~ 68288525 (+) False G834235

Expression Profile