RNA id: XM_036988916.1


Basic Information

Item Value
RNA id XM_036988916.1
length 2096
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110532798
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 71415728 ~ 71422252 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTGTGAAGACTGCCTCTGGAGGATCGGAGGACTGTCAGACTACAGGGTTGATTGTGATTTGTGGTTTAAAAGGAGTGGTTAATCATTTGGTCATTTGTACATATATTTTTGCATATGAAGCATTTTGTTCCATGATTTGCTTAAATGAAAATTGCTGAATAAGCTAAAAGCTGATGCCAAATAAATCACAACATTTACATATGAATCATtttgcagacgctcttatccagagcgatttagaggagcaattagggttaagtgccttgctcgagggcacatcgacagatttttttcACCTAGTTAACGCAaagattcaaaccagtgacctttcggtttcTGGCTCAGTGCTCTAATCGCTAGGCTAGCTGCCACATTACTACATTCTGTCAGATCTTTCACTTCCCTTATTGTGATTTTGTTTTCTGATGCTTTAATTTTGACCAGATAATTTTGTTTTTCTATGACAAAAACATTCTAGAGGTGTTGTGATACTACTTGAAACTGTGATACCTGAGCTGGTACCATGACAACAGTACAACCAATCATCCTTCTACTCTAAGCCAATAATAAGTGTTCTGAAACTTGTAAATTGCAAGTTAgagacgccccccccccccccccacccaaatgAAGGAAGTGTGAATCACAAGGCTGGTCTCGGAACAATACAGTAAAAGACCTGTCAACTCCAGTTGCCTTTTTTTGGTTGGTGACTAGGATGTGTGCGAACAGCTGCACAGCCTCAGTGAGTACTTGACTGAAGATGAAGATTCTCTTTCTCTTGATTCTTCTGTTAGATGTCCCTGAGATGGAAGCACAACAGAGGATGGTGGTGAATGGACAAGTGTTGCTGAGATTTGTCTTTCCTCCTTTCTACAATGGTTATGAGAAGTTCTGTTCTAAACTATATCCTTGGGGAGTTTCTGTTATTGTGAATACCAGGGGATATGTCAACGACTTCTACGAGGGAAGAGTATCCACAACCGAATACAACGGTGGAATGGACGTTGTGATATGGAATTTAAAGCCAGTGGACACTGGCAACTACAGGTGTGCTATTGTCACCATTGGATGGAATCATATCTACAAAGACTATAACCTCCAGATTGATAGTGGTCGACGTAGCGGTCCAGTATCCCCTCGACCTCCGGTCAGGTCAACCATCAGCCCCTTCATCTTCTCTTCCTCATCAGACACCTCTGGGCCTGTTTTCACCAAGGACCACAGTGACAGCCCCAGTGTTCCCTGGAGCTTTGGTTTACCACTAGCTGCAGGTCTTTGCATCGCTATGGTGATTGTGATCAGCTCAGTAGTCCTTGTTGTGGTTCATCACAAAATCATCACGAAAAAGAAATGTGGAGCAACTTCCAGTGACTCAGCTGCACACATCCTCTCAGATGTCCTTCAGGAGGAGAACAGTATTGTCTACACCACAGTGGACTTCAAGCCTCATGAGAACCATACCACTGAGCTGTATGCTAACCTACAGACACTCCGCAGCCCCAGAAGCACCGACTCACACAGAGAGCCTGCTGGAACAGTGGTGTACTCCACACTGGCTAGCAACCAACGCTGAACCGGATTATCTTCCTGATGATCCCAGAACTCCAATGTTAGAAAACCTGCATTGTATAACCTCAACCTggtttagggctctattcaatcagatccaCTTTAGTCGATGAttaaagtgggggggggggggtttgcggTATTGGAGGTGGAACTGCTTACAGGTTTatcaaatccacaagcggctccGGGCATTATACCTAAAGGTGGACACTGCCATTGGCTGCACGGTGTCACCATAATAGAAAACCCACGCAGCTTTGTTTACACGTTTGAACGCTGTTTGAACGCTGTTTGAACGCTGTTTGAACGCTGTTTGAACGCTGTTTGAACACTGTTTGAACACTGTTTGAACACTgcaatgtgagatgtaatctacacctcgaaTTAGGCTTATTTTTTGATTTGAGCGTCATTATTTCtgtttataaactgggtggttcgagccctgaatgctgattggctgacaggcgtggtatatcagaccgtataccacgggtatgacaaaacatttattttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU952652 lncRNA upstream 29051 71386236 ~ 71386677 (+) True G837448
TU952644 lncRNA upstream 36286 71378990 ~ 71379442 (+) False znf335
TU952636 lncRNA upstream 52702 71362812 ~ 71363026 (+) True G837432
TU952633 lncRNA upstream 54931 71360556 ~ 71360797 (+) True G837429
TU952632 lncRNA upstream 57608 71357917 ~ 71358120 (+) True G837428
TU952665 lncRNA downstream 16039 71438291 ~ 71438790 (+) True G837459
TU952671 lncRNA downstream 27109 71449361 ~ 71449574 (+) True G837465
TU952672 lncRNA downstream 28763 71451015 ~ 71451232 (+) True G837466
TU952676 lncRNA downstream 36280 71458532 ~ 71458950 (+) True G837470
TU952677 lncRNA downstream 40183 71462435 ~ 71466023 (+) False lamtor5
XM_036988912.1 mRNA upstream 64 71376417 ~ 71415664 (+) False znf335
XM_036988913.1 mRNA upstream 64 71376417 ~ 71415664 (+) False znf335
XM_036988914.1 mRNA upstream 64 71376417 ~ 71415664 (+) False znf335
XM_036988915.1 mRNA upstream 64 71376417 ~ 71415664 (+) False znf335
XM_036986917.1 mRNA upstream 40798 71365668 ~ 71374930 (+) False mmp9
XM_036988918.1 mRNA downstream 39955 71462207 ~ 71466030 (+) False lamtor5
XM_021616944.2 mRNA downstream 40156 71462408 ~ 71466030 (+) False lamtor5
XM_021616945.2 mRNA downstream 45465 71467717 ~ 71550293 (+) False slc16a4
XM_036988919.1 mRNA downstream 58627 71480879 ~ 71550293 (+) True slc16a4
XM_036988923.1 mRNA downstream 281517 71703769 ~ 71764626 (+) True LOC110531270
TU952642 other upstream 31265 71383899 ~ 71384463 (+) True znf335
TU952646 other upstream 34070 71381159 ~ 71381658 (+) False znf335
TU952565 other upstream 182304 71232786 ~ 71233424 (+) True G837369
TU951966 other upstream 656033 70754351 ~ 70759695 (+) False LOC110532786
TU951967 other upstream 656085 70754351 ~ 70759643 (+) True LOC110532786
TU952680 other downstream 40183 71462435 ~ 71466023 (+) True lamtor5
TU952785 other downstream 205596 71627848 ~ 71639759 (+) True G837570
TU953276 other downstream 425402 71847654 ~ 71848037 (+) True G837970
TU953295 other downstream 512650 71934902 ~ 71937004 (+) False LOC118966113
TU953296 other downstream 512650 71934902 ~ 71937004 (+) True LOC118966113

Expression Profile