RNA id: XM_036988912.1


Basic Information

Item Value
RNA id XM_036988912.1
length 6512
RNA type mRNA
GC content 0.55
exon number 30
gene id znf335
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 71376417 ~ 71415664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAAGTGAGGAGATACTGATGGCGCCCGACTAGAATGGAGGAGCAATTATCGCGTACAACTTCTTATACAGTTTTGTCGTGTCTACTAAGTCATAAACAAATTCAACTCGCAATACACAATGGAAggggagatagaggtggagagcAGCAGTGATGTGGGTCCGTCGGGGTCCGGGATGGAGGAGCCGTCTGAGAGCGGTATGGGCATGGAGTCGTCGGAGGCCATGTCTGCAGACAGCAGCGACGCAGCGGCACCACACGCCTCACGCCACCACAGCCAGCACCGCCATGGGCACGGTCACCATGGCCAGGCCCCAGAGTCAGACTGCCATGTGGGACAAAGCTCAGAGGGTATCCCGGCGTTCTTACCAGAGACCAGCTCCAGTACAGACGTCACCCACCACAGAGCCACCGTCCACCTCCCGGACTCCTCCTCTGTGGCCCAGTCCACCAGCGTCTCCACCGTAACCCAGTCCATCCTGGTGTCCGGGTCGGCCCAGGTGACAGTCCACTCCAGTGCAGTGGTGTCAGACTGCGGGGGCATGATGGTGTCAGACTGCGGGGGCATGATGGTGTCAGACTGCACAGCCTCTACCTCCTCGGACCTGGGATCAGCCATAGACAAGATCATAGAGTCCACCATCGGACCTGACATCATGAACGGATGTATAGCAGTGACCAGTGCAGAGGACGGAGCTGCAGAGACCAGCGAGGGGCAGTATTTAATACTACAAGGACCAGACGATGGGGCCCCTATGGTAGCCCACATGTCGTCCTCGGCTCTGTCCAGCCATCACCGCATCACCATCGAGGCTCTGGGAGAGGGTCCTACCTCCACCTGTCACGACCAGGGAGACATGCAGGATAACCTGGATCCAGACCAGCCCTCTGGGAGTCACTCTCACTCCGGCCACTACCCAGACCACGAGGACCAGGACAACCAGCCTCAGCACTCACACGCGTCCCAGTACATGGAGTGTAGCGGTGGAGATGCGGACGGACCTGATCAGACTGGAGAGTCCTCCTCCTCGTATGTAGACGATGAGGAACCCGACCAGACACGTTCCTCCCGCTCCCTCGTCCGGTCCCGTTTCCCTGAGTACGGTATGGTCGACAACTCTGGCCAGGACCTAAGGGGGTACGTGGAGTGTAGTGGTAGCGGTGCCACCGACTCCAACCCCTCGTCCCCTGCCCGCCTACGACACACCCACTATATGGTGGACTGCAGCGCGGGGACGGGGGCGTACCTGGAGTGTGCCGGGGACGAGGAAGAGGATTCGATGCAGCACCACTCTCGGAGTCACATCGACAGCAGCAGCAGTGCTAACCATTCCCAGAATCACCAAACTATGTCTAACCACTCCCAGAGTCACCAAACCCTGCGGCAGTATGTGGAGTCCGGGGCTGCGGTTGCAGATTCAGAGCAGCCCGGTTGTTCCAACTCCCACTCTCAGAGTCACCAAACCCTGCGGCAATATATGGAGTCTGGGGCTGCAGATTCGGAACAGCCACGATGTTACCAATACCAGGCTGAGGAAGGGCAAGGAGAGGACCCAGACCAGAACCAGGACCCAGACCAGCCACAGCACTCTGACCAGCAGCAGCCTCAGCACTCACACTACATGGAAACCACCAGCAGCAGCACTGGCCCAGAAGGCGAGGGTTCCACCAcagaccaccaccacccccaggcAGACACCGCAGACTCGGGCTCAGCAGATCATCCAGAGGCTATGGAGTGTTCTGAGAGCCAGCCTGGCCCTTACATCAGTAGCAGTGGAACCTATTCCTACCACCCGGAGCCTGAGATGGAAGAGGCCCCTGAACCTACATGGTCCCCCAGTTTGGAGAGGCCTtcgaggggagaggaggaggagggcggcGTGGTGGGGGGGTCTGGGGCTCCAGTCGTGGAGGAGGGGGCTGGGAGTGGATCAGGGGTCGCCGTCCCCCACACCATGGCTGAACTGGAGGAGATGATGGAGGTGGTAATCGTTCAGCAGTTTAAGTGCAAGATGTGTCCCTACAAGAGTGTCTCCAAAGACACCCTCATCAACCACATGAGAGACAGGCACTTCAAACCCACAGGTGGCCCCCCTCCTAAGAAGCGTGGTCGTGGTCGGCCCCGGCGTAGTGATACGTTGGCCCGTCAGCAGGCTGAGGTGAAACCAGAGCCCCAGCCTGAGGAGCCAGAGGACGATGACATCGTAGACGCTGGGGCCATCGATGACCCTGAAGaggacAGTGACTATAACCCAGCAGATGAGGACTGTAGGGGCAGACAGCCTGCTCTCCTGCGACAACCTGtcccccctccctgctcctcgtcctcctccacaGACCGCCCCAGGCGCAGGGTGGGACGACCCAGGAAGTTCACCTACACAGAGGGCAGCTACAACGGCAAGGAGGCAGTAGCAGACGGGACGTCAAAGCCTAAGGGGAGTGTGGATCCTCAAGGCTCGGAGGAGGCCAGTTCCTCAGGCCTGGGAAACGGCCCAGGTCCCTTGGCCAATGGAAACACAGCGGAAGCCGGCATCAGCCAATCGGACTCTGAGAACAAAGACCCGTCGTCCAATGGGAGGCCAGAAGAGCTTTTCCCAAGGAAACGGGGTCGACCCTCCAAGCGGTTCATCAGAAAGAAGTACAAGAAGTACATGAACCGCAAGTACTGTAAGTCTCTGAAGCCGCTCCTGAGGCCTCACAGTTGTTGGATCTGCGGCTCTCGCTTCCTGTCCCAGGAGGACCTGAGGTTCCACGTTGACTCTCACCAAGGAAACGACCCAGAGTGCTTCAAATGCCTGCAGTGTAACTACCGCTGCAAACGATGGTCCTCGCTTAAGGaacacatgttcaaccaccaggGGAACAAGCCCTTCAAGTGTGAGGAGTGTGACTACAGCAGTGTGTATAAGAAGGATGTCATCAGACACTCTGCAATACACAACAAGGAcaaGAAAACAAAGTCTGAGTCATGTGGTCTGTCTGACTCTCAGCAGGTATCTAAGGTGTTGTCGTTCCCGTGTCCAGTGTGCCACAGAGTCTACCCCATGCAGAAGAGACTCACTCAGCACATGAAGACACACAGTACCGAGAAACCACACATGTGTGACAAGtgtgggaagtccttcaagaaGAGATATACGTTCAAGATGCATCTCCTCACACACATCCAGAGTGTTGACAACAGCAGGTTCAAGTGTGAGTTCTGTGACTATGACTGTGACAACAAGAAGCTCTTGCTCAACCACCAGCTGTCCCACACCAACGACCGGCCCTTTAAATGTGACTACTGTAAATACTCCACCTCTAAAGAGGACTTCCTGGTCTCACACCTGGCCATCAAACACACAGGAGAGAAACCGTTCTCCTGTGAGATGTGCCACTTCATGACGAAACACCGTAAGAACCTGCGTCTGCACGTCCAGTGTCGCCACCCGGAGGCGTTTGAGGAGTGGAGCGCTACGCACCCTGAGGAGCCCGTCAGGCGGAGGAGGAGACCTTTCTTCACCCAGCAACAGATAGAGGAACTCAAACAGCAACACGACGACACACCGGGCCTACAGAACACTATACTGGCGGTGGATCCTGACACACTACAAGCCATGCAGACAATGCAGAACGCCTCAGTCTCCCAAGATGCAATGGGAAACACCACCATCATCTACGAACAGGCCGGAAACTCAGACCTGTCAGCCCAGAATGCTTTGGATCTGCTGTTGAATATGAGCAACGCCAGAGAGCTGGTGGGAAACTCACTGCAGGTACAGGTGTTGAAGTCGTCTGACTCCAATGTTCTAGAAGCAGGCTCCTGGACGGGCGTTACCTCGGCGACAGGGGGAGGGCAAAAAGTAGTGACCTTTCACGTGTCTGAGACCGGCGAGACCCTGGTGCAGGAGGTCCAGGATGTGCAGGAGGGTTATGAGGCAGGGACCAATGAGAATGGAGAGATCACCCAGGTGGCCATCCAGGCCTATGAGGGGGCAGAAGGCTTCAGTGTGTTGGAACAGGTGGAACAAGCTACAGAGGAGATCCACAGCACCGGACCTGGGTACAGCAGTGGCGAGGGGAGTCCTCAGCccatggaagaagaggaggagggaacagAAATAGTCAGAGAGAATGGAGAAAAGTACTACCTGACCTCCGGGCTAGGGGATGGGGTGCTGCAGCAGGTCGAGctgAGCAGTGAGGCCCCGGGTTCTCCCTCCATGGTGGGTTCTCCCCAGCAGAACCAGCTCAACCCTAAGAGGTTCTCCTGTCGTATCTGCATGGAATCGTTCCACGGCCGCAGTGACATGGAGAACCACAAGAGGGCCCATATCGACCCATCCACCTTTAAGTGTCCCGACTGTGACTTCACTGCCTCCTCCTGGCCAGTTGTcaagACCCACATGGTCATGCATGCCTACCTGAGACCTCACAAGTGTCCCAGCTGCAGCTTTGCCTCCAAGAACAAGAAGGATCTGAGGAGACACATGATGACGCATACCAACGAGAAGCCCTTCACCTGCCAGATCTGTGGACAGAGGTTTAATCGCAACGGCCACCTCAAGTTCCATATGGAGCGACTCCACAGCCAGGACCCTCCGACAAAGAAGAGCCGCTCTGGAGCAGGCTCCCAGCAGACCATCATAGTTAACAATGACGAGGAGGCTCTCGTCACGCTACAGTCAGCTCTGCAGGCAGGACAGACTATCAGCCCAGAGCAGCTACAACAGGCCTTGGGTCAGGACCACATCATAGTGTCCCAGGAACAAGCCTTGGGTCAGGACCACATCATAATGTCCCAGGAACAAACCTTGGGTCAGGACCACATCATCATGTCCCAGGAACAAACATTGGGTCAGGACCACATCATAGTGTCCCAGGAACAAGGCCTGGAAGACCAAGAGGAGGCCACGTACATTCAGCAGATCACCACAGTGGACGGACAGACGTTACAGTACATGACAGGAGACAACCAGGTCCAGTATATCATCTCTCAGGATGGAGTCCAACACTTCCTACCTCAGGAGTACGTGGTGCTATCAGACGGGAACCACATCCAGATGTCAGATGGCCAGATCATCCAGTATGAGCATGATGGGGCCTTCCTGCAGGAGCAacagATTGCCCTGAGTCATGACGGGCAGATCCAGTATCTTCCCATCAGTTCAGAACAACAGATGGTCAGTCCTGAGGACCTGGAGGTTGCTGAACATTCTGCCATTACTGCTGTAGCAGATGCAGCCTTGCAACAGACCCAGACGGTCTATACAGAGGCCACACAAGAACAGCTGGAGCAGCTACAACAGCAGGGAATCCAGTATGATGTCATCACCTTCACCGATGAGTAGAGACCCTCGGATGGAAGTCGGGAGGGATGGCTCTCTGTGATTGCGGACTTGTCTCCTAGTATGATGTCTACTATTGGCTGCCTGATGTCCGTATGTAGTGCAGGACTAGTACGGGGGAACCACGATGACCAGTGACCTCCAGCATGGTTCGACATGATCGGCCCGAGCGAGACTGCAGAGAATCTAAAAATCATTGTATAAAATCATCCAAAACAGCTACTCATTATGCGATCAAGATTGGCAAATCTTGGCAGGGTCTTGCCTAGGTCCATCCCCTAGAACACACTGCTCTACTCTCTAGAAGCTCTGCCGTGCTTCAGATACCCAGAACCCACTGCTCTACTCTCTAGGAGCTCTGCCATGCTTCAGATACCCAGAACACACTGCTCTACTCTCTAGGATCTCTGCCGTGCTTCAGATACCCATAACCCACTGCTCTACTCTCTAGGATCTCTGCCGTGCTTCAGATACCCATAACCCACTGCTCTACTCTCTAGGAGCTTTGCCATGCTTCAGATACCCATAACCCACTGCTCTACTCTCTAGGATCTCTGCCGTGCTTCAGATACCCATAATCCACTGCTCTACTCTCTAGGATCTCTGCCGTGCTTCAGATACCCATAACCCACTGCTCTACTCGCTAGGAGCTCTGCCGTGCTTCAGATACCCATAACCCACTGCTCTACTCTCTAGGAGCTCTGCCGTGCTTCAGATACCCAGAACCCACTGCTCTACTCTCTAGGAGCTCTGCCGTGCTTCAGATACCTGGGATGCTCGAAGCAGCCCCAGAGAGGATTCTAGTGGCTGGTAGATCTATCACTCATAGTGGGAGTGATGAATAGATGAACTCTCACTGTTAAGTAGATCTATAAACAGAAGCTTTTGTAAATTCTAAATATTGTACCCGTCGCTTCTAAGTTAATCAATAGGGGCTGATGTACATTAAAGAACAAAGTTACACATGGTTGGATGATCTAGACTGTGTCTGAAAtgccaccctatttcctacatagtgcactacttttgaccagggcccttcaAAActggtgcactaaatagggaatagtttGTATTTTGGTACGTAGGCGTACTCTGTAATTATTTAAGATCTGCGGTTTCCTCAACACCTGCTTTGACTTGCAAGACAATGTCACAAAAGAAGAAATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU952636 lncRNA upstream 13391 71362812 ~ 71363026 (+) True G837432
TU952633 lncRNA upstream 15620 71360556 ~ 71360797 (+) True G837429
TU952632 lncRNA upstream 18297 71357917 ~ 71358120 (+) True G837428
TU952631 lncRNA upstream 18661 71357524 ~ 71357756 (+) True G837427
TU952628 lncRNA upstream 22901 71353214 ~ 71353516 (+) True G837424
TU952665 lncRNA downstream 22627 71438291 ~ 71438790 (+) True G837459
TU952671 lncRNA downstream 33697 71449361 ~ 71449574 (+) True G837465
TU952672 lncRNA downstream 35351 71451015 ~ 71451232 (+) True G837466
TU952676 lncRNA downstream 42868 71458532 ~ 71458950 (+) True G837470
TU952677 lncRNA downstream 46771 71462435 ~ 71466023 (+) False lamtor5
XM_036986917.1 mRNA upstream 1487 71365668 ~ 71374930 (+) False mmp9
NM_001124370.1 mRNA upstream 1487 71365712 ~ 71374930 (+) True mmp9
XM_036988909.1 mRNA upstream 46007 71295615 ~ 71330410 (+) False adora1b
XM_036988910.1 mRNA upstream 46007 71295615 ~ 71330410 (+) True adora1b
trnah-gug-4 mRNA upstream 201304 71175042 ~ 71175113 (+) True trnah-gug-4
XM_036988916.1 mRNA downstream 64 71415728 ~ 71422252 (+) True LOC110532798
XM_036988918.1 mRNA downstream 46543 71462207 ~ 71466030 (+) False lamtor5
XM_021616944.2 mRNA downstream 46744 71462408 ~ 71466030 (+) False lamtor5
XM_021616945.2 mRNA downstream 52053 71467717 ~ 71550293 (+) False slc16a4
XM_036988919.1 mRNA downstream 65215 71480879 ~ 71550293 (+) True slc16a4
TU952565 other upstream 142993 71232786 ~ 71233424 (+) True G837369
TU951966 other upstream 616722 70754351 ~ 70759695 (+) False LOC110532786
TU951967 other upstream 616774 70754351 ~ 70759643 (+) True LOC110532786
TU951291 other upstream 1166782 70208678 ~ 70209635 (+) True G836374
TU951181 other upstream 1343190 70032992 ~ 70033227 (+) True G836274
TU952680 other downstream 46771 71462435 ~ 71466023 (+) True lamtor5
TU952785 other downstream 212184 71627848 ~ 71639759 (+) True G837570
TU953276 other downstream 431990 71847654 ~ 71848037 (+) True G837970
TU953295 other downstream 519238 71934902 ~ 71937004 (+) False LOC118966113
TU953296 other downstream 519238 71934902 ~ 71937004 (+) True LOC118966113

Expression Profile