RNA id: TU952633


Basic Information

Item Value
RNA id TU952633
length 242
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G837429
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 71360556 ~ 71360797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTATGGGCTAATCTAGGTAGGATAATTGTATTGTAGTGTTATGGGCTAATCTAGGTAGGATAATTGTATTGTAGTGTTATGGGCTAATCTAAGTAGGATAATTGTATTGTAGTGTTATGGGCTAATCTAAGTAGGATAATTGTAGTGTTATGGGCTAATCTCGGTAGGATAATTGTAGTGTTATGGGCTAATCTAGGTAGGATAATTATAGTGTTATGGGCTAATCTAGGTAGGATAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU952632 lncRNA upstream 2436 71357917 ~ 71358120 (+) True G837428
TU952631 lncRNA upstream 2800 71357524 ~ 71357756 (+) True G837427
TU952628 lncRNA upstream 7040 71353214 ~ 71353516 (+) True G837424
TU952618 lncRNA upstream 48254 71311526 ~ 71312302 (+) True G837414
TU952611 lncRNA upstream 59442 71300811 ~ 71301114 (+) True G837407
TU952636 lncRNA downstream 2015 71362812 ~ 71363026 (+) True G837432
TU952644 lncRNA downstream 18193 71378990 ~ 71379442 (+) False znf335
TU952652 lncRNA downstream 25439 71386236 ~ 71386677 (+) True G837448
TU952665 lncRNA downstream 77494 71438291 ~ 71438790 (+) True G837459
TU952671 lncRNA downstream 88564 71449361 ~ 71449574 (+) True G837465
XM_036988909.1 mRNA upstream 30146 71295615 ~ 71330410 (+) False adora1b
XM_036988910.1 mRNA upstream 30146 71295615 ~ 71330410 (+) True adora1b
trnah-gug-4 mRNA upstream 185443 71175042 ~ 71175113 (+) True trnah-gug-4
trnah-gug-3 mRNA upstream 186110 71174375 ~ 71174446 (+) True trnah-gug-3
XM_036988900.1 mRNA upstream 531084 70800184 ~ 70829472 (+) True LOC110532780
XM_036986917.1 mRNA downstream 4871 71365668 ~ 71374930 (+) False mmp9
NM_001124370.1 mRNA downstream 4915 71365712 ~ 71374930 (+) True mmp9
XM_036988912.1 mRNA downstream 15620 71376417 ~ 71415664 (+) False znf335
XM_036988913.1 mRNA downstream 15620 71376417 ~ 71415664 (+) False znf335
XM_036988914.1 mRNA downstream 15620 71376417 ~ 71415664 (+) False znf335
TU952565 other upstream 127132 71232786 ~ 71233424 (+) True G837369
TU951966 other upstream 600861 70754351 ~ 70759695 (+) False LOC110532786
TU951967 other upstream 600913 70754351 ~ 70759643 (+) True LOC110532786
TU951291 other upstream 1150921 70208678 ~ 70209635 (+) True G836374
TU951181 other upstream 1327329 70032992 ~ 70033227 (+) True G836274
TU952646 other downstream 20362 71381159 ~ 71381658 (+) False znf335
TU952642 other downstream 23102 71383899 ~ 71384463 (+) True znf335
TU952680 other downstream 101638 71462435 ~ 71466023 (+) True lamtor5
TU952785 other downstream 267051 71627848 ~ 71639759 (+) True G837570
TU953276 other downstream 486857 71847654 ~ 71848037 (+) True G837970

Expression Profile