RNA id: TU924553


Basic Information

Item Value
RNA id TU924553
length 450
lncRNA type antisense_over
GC content 0.58
exon number 4
gene id G812684
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48538027 ~ 48541698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACTGTTCAAGCGCTTCTGTATCGGCTTCACAAGTGTCAAGACCTCTGACCTTTtggccctcctctcccttttcaCCCTTTTCTCCACGAGGACCCGGTTTGCCAGGAGGACCCGTGACCCCAGGAGCTCCAGGTATGTCGGAGGTACAGGTGCAGGCATAGGCAGGTGCGGGGCAGCTCTCCTCATCCCTCAGGCCTGGCAAATCACAGCAGGTGTCCTCTAATGCCCAGGTGGTGTTGCACACAATCTCAAAGGACTGTAGCTGGAACGGGGCAGAGCCGCTGTGTGGTCCACGGGTCTTCATCAGTTTGCCCAGTGTCTCAAAACCATCAGTGGGCAGAGTCCCCAGTGGCCGTGCGGGCCTCTCACCCACATGCTGGCAGTCCACAGACAGGGATACGCTCACCTGGCTGATAGACAGGTGGATCTGCCAATCACAggacagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU924550 lncRNA upstream 3156 48534571 ~ 48534871 (+) True G812683
TU924464 lncRNA upstream 102368 48426284 ~ 48435659 (+) True G812613
TU924400 lncRNA upstream 208200 48329596 ~ 48329827 (+) True G812555
TU924209 lncRNA upstream 251601 48278177 ~ 48286426 (+) False G812382
TU924208 lncRNA upstream 253302 48278177 ~ 48284725 (+) False G812382
TU924551 lncRNA downstream 1461 48540338 ~ 48541698 (+) True G812684
TU924612 lncRNA downstream 80892 48619769 ~ 48620058 (+) True LOC118966185
TU924860 lncRNA downstream 202925 48741802 ~ 48742338 (+) True G812951
TU924875 lncRNA downstream 257426 48796303 ~ 48796775 (+) True G812966
TU924963 lncRNA downstream 371299 48910176 ~ 48910471 (+) True G813047
XM_021615993.2 mRNA upstream 134024 48400637 ~ 48404003 (+) True LOC110532258
XM_021615992.2 mRNA upstream 143928 48386767 ~ 48394099 (+) True LOC110532257
XM_021615978.2 mRNA upstream 278690 48224647 ~ 48259337 (+) False snphb
XM_036988194.1 mRNA upstream 278690 48236716 ~ 48259337 (+) True snphb
XM_021615974.2 mRNA upstream 379063 48104332 ~ 48158964 (+) True ntsr1
XM_036988202.1 mRNA downstream 42366 48581243 ~ 48582509 (+) True taf13
XM_036986950.1 mRNA downstream 77446 48616323 ~ 48617448 (+) True LOC110531191
XR_005053451.1 mRNA downstream 80106 48618983 ~ 48620336 (+) False LOC118966185
XR_005053452.1 mRNA downstream 80106 48618983 ~ 48620336 (+) False LOC118966185
XM_021616005.2 mRNA downstream 87442 48626319 ~ 48636018 (+) False si:rp71-17i16.5
TU923963 other upstream 555726 47982001 ~ 47982301 (+) True G812143
TU921250 other upstream 2402295 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 4084950 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 4341986 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 6189241 42346176 ~ 42348786 (+) True G805600
TU924562 other downstream 6577 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 420872 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 464442 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 576260 49115137 ~ 49115618 (+) True G813139
TU927553 other downstream 2257337 50796214 ~ 50800381 (+) False G815428

Expression Profile