RNA id: TU932673


Basic Information

Item Value
RNA id TU932673
length 1277
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G820174
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55155407 ~ 55156727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTACACAATTAAATAGGTTTATAAAGTAGTGTATTCAGTTAGGCATTTATTCTGACGTCAAAGTGGAATGTTTTTCATAAACTGCAGCATTTCAAATTCTCCCCACTACACACATATGTATGCATGTATAAATAGTTCAACTGCAGCTCAGTGAGTATACATGTATCCTTAGATTTTTGATATGGTGAAAAGCAACTCAATAAACAAGACTTGTAAAACCGTAAGAAAATAACACTTGGATAAAAAAAAGTGACTTTTGGGTGTTGTCAGACATAGGGCAACCCCACATCACTGAATCATAGGTTCTCCCATTAGAGTGtcaaagcacacagacacactattcCTCATTGTGTTGTATGCCTTATTCACTGTCAGTCATCTTCCTTGCCTCTGAGAACTCAACATTCAGCAGTCAGAACTATGCCAAGTAATTTCATGGTTCTAAAAAGGCAAGCGTATGCAACACAATTAAATAATAAGTTCCACATCATTAAAGTGACATCAAAAAGACAGATCCTAATTTTAACAATATAAAAGGAGTGTCAGAGTTTAATAAACTCATCAAATATAAGAGTGCTTATATACTGTACAAATGGTACAATAGGCCTACAGAAAATTATTATATCAGACACTAATTCCCAAGATTAAACATTACCAGAGATATCCATCTTCATTGGGTCCTTGTATCACTGGATTTGTTCCATAAGGCCAACATGAGCAACAGTGAGAAGCTACAGTGAAATGTATATACTTGTCTGCAAGGTTTCAACTGGACCCTGTAAACGGATCATTCATTATCaaatgtgtgtgtctttgtctgtgttgtgtgtttgtgcttgcatGTGTATCTTGTACACATTTGTGTGTATAttcttactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcctctTTTTCTGCTCTGACCAATTGTCTGTGGCCACGCTGTGAGCTAAGTGAGCCTGTTTGTGACCAGCATAATGTGATGACACCTATGGGAAGGGACAATGCAATGCTCTCAGATGTCAGTGGTTTCCAGGATCCTTGGCGTGTCCATCTCCCTATTGGTGCAGCGCTTGCCGTTGCTCTGTCCATTGGCTCGGTAGTGCACACTGCCACCTGGCTTAGTGATGGTGTCCTCCTCAGAAGCCGTGAGCTCCAGGCTGACTGTAGCGCGACTCGTCTCGGTCACAGAGGAGTTGGTGTTGTAGTGGGAGTAGGAATCTGTCCATTTCCACACGAGTTTGGTCTGGGCCCATTTCCTTCTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU932676 lncRNA upstream 6127 55127150 ~ 55149280 (+) True G820176
TU932662 lncRNA upstream 45208 55108836 ~ 55110199 (+) True G820163
TU932663 lncRNA upstream 47321 55107689 ~ 55108086 (+) True G820164
TU932661 lncRNA upstream 48937 55106092 ~ 55106470 (+) True G820162
TU932632 lncRNA upstream 81032 55074162 ~ 55074375 (+) True G820133
TU932675 lncRNA downstream 364 55157091 ~ 55158268 (+) True G820175
TU932713 lncRNA downstream 27877 55184604 ~ 55184824 (+) True G820211
TU933193 lncRNA downstream 64852 55221579 ~ 55221882 (+) True G820655
TU933191 lncRNA downstream 67309 55224036 ~ 55224311 (+) True LOC110532406
TU933216 lncRNA downstream 103634 55260361 ~ 55260802 (+) True G820673
XM_036988340.1 mRNA upstream 220837 54926728 ~ 54934570 (+) True twist3
XM_021616270.2 mRNA upstream 849234 54295022 ~ 54306173 (+) True LOC110532395
XM_021616271.2 mRNA upstream 907492 54245323 ~ 54247915 (+) False LOC110532396
XM_021616267.2 mRNA upstream 915901 54234821 ~ 54239506 (+) False LOC110532392
XM_021616281.2 mRNA downstream 35626 55192353 ~ 55207365 (+) False LOC110532404
XM_036988349.1 mRNA downstream 36827 55193554 ~ 55207365 (+) True LOC110532404
XM_036988353.1 mRNA downstream 60879 55217606 ~ 55224372 (+) False LOC110532406
XM_036988352.1 mRNA downstream 60894 55217621 ~ 55224372 (+) False LOC110532406
XM_036988354.1 mRNA downstream 60894 55217621 ~ 55224372 (+) False LOC110532406
TU932380 other upstream 428031 54726871 ~ 54727376 (+) True G819897
TU929242 other upstream 2427887 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 2829767 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 3808913 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 4076465 51078447 ~ 51078942 (+) True G815610
TU933208 other downstream 76531 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 374310 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 540913 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 817315 55974042 ~ 55975316 (+) True G821363
TU934014 other downstream 904979 56061706 ~ 56063655 (+) True G821409

Expression Profile