RNA id: XM_036988354.1


Basic Information

Item Value
RNA id XM_036988354.1
length 3739
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110532406
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55217606 ~ 55224372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCTTAACACTTGTTCTGATCAGctggaacaataacaacaataacacagTCGGTTTGGCGCTCAGATTATAACTTTTATGGATGGACTTCAGTCAAGGTGATCAACAAGATGATCCATATAATTTGTTTATAGGATATGTAGATTTTTTTGTAGTGGAATTATTTGTCATTATTTTGGTTTTGTCGGATTGGTTCCTCGGTATGCTGACCAAACGAGATGGTGAAGAACTGAGTTGGCTGGTAACGTTACTGCAGCAAGCTTAGCTAGCATTCTAAGGTGCCCTAATTGTCATTTGAAAGGATGCGTAATAAATCCAGTTATTCGTCCAAGGTAGCTGAACTAAAAGTTCAGGTTAGTGCAATATTGCGTTAGGAAGAATACAAACTATTTAGGTTCCTGATTTGTTTGTAGCTAATATGTTGCTGGTACATTTAGTCTGAAACTGAATTGGCTTGTGTCTTCTGTCCCATCCTAACCCTGAAGCGAACACAACCACTTTTCTTGGCTAACAATACCAGCTAGGTAGCTAACTAGAGTAGCTAAGTTTTTCTAGGTCGTTGCAGTATTCAAGGAACTCTGCTTGCTAGCAACACAGTAAGCAAATTATGAGTTGTGTTTACAAACTGTACCAAACGAACGTTATTTGGATGTCTACCAACGTTAGGTAGCGAATTAGCAATTAACAAAGGGAAAGTAGTTGATAGATGTGGCCAGGCCTCACCGCACTCATTGTAAAGATGAAAACAATAGATTGCATAGAAAAGCTAGCAGCGAGTTAGCACGCTAGCTAACATTGATgcatgtttatttcacttttgtaaaCTATAGATAAATTATTCAATATAACGATTTATCTTGTATAGCTACGGACTGTAACTACAGTCTGCAGCTGTCAGAAAGCGCAACAACAGTCTCTAAGGTTATTGTATAGCTGGCTAATTGTGAGGAAGCATTACCATGCATTTTTGATTTTGTGAGTTTTAGTTGTTGAAGCTTGACTGTCAGTAAGCTAATGTTAATATTAGACATGCTTAACCTCAGTATTTGTAAACCAACTCTTCTAATACGTTTGCACTATTATTCTCCCAAATTAGAGATTACTTGTGTCAGAAGGTGCTGAAAGTAGCATATCAAGCCTTTGGACTTGAATTTTGCCACAAAAGACAATTTAGGGGACTAGAGCACCCCGGCTGTGTGTGCCATGTCAGAGGCACTCGTATCAGGTCAGACGTCGGAGGACCTTTTGGCAGACTTTGAGTCTCTTTTGAATGCTGGGAGTATTGACTTATCAGAGAACCACCAGATAGTCATAATTTCTACCCCCGGCAATGTGGGCTTAAACTCAGCTGTACCCAGCAACACTGGAGAGATCCTCCTGTTCGCTACCCCCCAAGGCCCTGCGGATGTGGTCCAGGACCAGCGACGGCCAACTCTGGGACGACCTCCGGTGAAGAGGAAGCTGGACTTGGACAGTGATCACCAGTATGTCAGCAcctctcgcccaccttctcttGGGAGGGCCCCAACGTCCACACCAGCACCACCCAGAGTTCCAAAGCCTTCGACAGAGAAGTCTCGCTATGACACATCTTTGAACCTGACCACCAAGCGCTTCTTAGACCTGCTAGCCCAGTCTCCTGACGGGGTGGTGGACCTCAACTGGGCCTCACAGGTCCTGGAAGTGCAGAAGAGACGCATCTATGACATCACCAATGTCTTGGAGGGTATCCAGCTCATCTCCAAGAAATCAAAGAACAACATACAATGGCTGGGGAACCACATTGATGGAGCGTCTGTTTCCCGTTACCAGGACCTACAGAAAGAGGATCTACGGAAGACTTTTGACTCTCCTGACCAGCTGGTGATGGTCATCAGAGCCCCTCCAGAGACCCAGATGCAAGTGTCAGAGCCCAGTGAGGGCTATCAGGTCTCCCTGAAGAGCACCCAGGGTCCCATTGATGTCTTCCTGTGCCCAGAGGATATTTCTGGTGTCTGCAGCCCAGTGACAGGCATCAGCCCTTCTAAGGCCACATACCAGATAATGCCCCAGCCTGCAGAACAACCACAGTGCAGTTCCACACAGGAAATGACATTGTCAACAGCTGCGTCCCAACAGAACTCCTCTCCACTGCCATTGTTTCGTGAAGCGGgagCAGTCCTGGAATGTTACCCGTTCACTAACTTGGGAGTGCTGCCAGAATTGGACCTTTCACCCTTGTCATCCTCTGACTTCCTCAGTGGGGAGGGCCTTGGTAACCCACTGGATGGGTTCATCAACCTGTCCCCTCCACAAAGCCACAGCTACCACTTTGGCCTAGAGGAGCATGAGGGCATCACTGAACTGTTTGACTCTGACTTTGGAGACTTCACCCCACTAGAGTTGGGGTGGAGAGAAACACCCACAGAACAAGAATGAGGTTGTATCTCTATGGAAATACACACCCTTTTCCCCTCAGAAAAGTATTCCCACGTGGATAAAATACAGAATTGTTCAGCACAGACAGTAATGGCACTTAAGTCGTCTAGCAAGAGGTTAGCTTTAGATGGCTATTTAATTTATTTCTACACAGATAATGTTTTTGTAccaagaatgtttttttttttcttcccctaaGTGGCTTGAGAAGGTGTACTTGTGGGATATGGACTTATCAGCTTGGAAGCTAATACTGAATTTGTTATATTAGGTAGGCATTTTTGCCATAGTCTCAGGTGTAAGGAAGAGTCAGACTTTTCCGCTAAGAGTTGGGTTTCAGATGCATTTTAAGAAGTCTTACAGTATGTTGGCCAATGGTAATGGCAGGATATAGCCTATGTAGGTTAAGAGACCTTTTATAGATGAAGTTTGGGATGGGGGTTGGGATGCCATGCCTTAAAGCAGTGGTTCTCATTCCTGGTCCTGGGAacccaaaggggtgcacatttttgtttttgccctagcactacacacctgattcaaatcatcctggtccccaggaccaggattgagaaccagTACCTTAAAGGaaagattcacccattttgaatgttatatcgtttttgtgcatctctgagcgATGTTCTATCGATTCCTGGGGTCCTTTCATGTTTTCATGTCTATCTAAGCTATTGTCTTTTCAATCTTGAGATGCACAAAAACATATTCAAACATTCAAACATTTCCTTTAACATTGATTAGATCTGTTTGGTAATATAATTACCAATAAGAAAATATGATCTCTTTTAAAACCTGTCCATATTGATCTACAGTTTGAATATTGTTTTACCAGGCTTTACATTTGGTTGATTGTCAGTCATACATTATATCACAGTTTGTCATTATCATGAACCTTATCACAGCTCCTTTTCTGCAGGTCGTATGCAGTGCcttacaacaacaacataaaagtGTTGGATGGATGCAATTCAGGTGTTATTCTGTGTCTATAATTGAGGTTTTTGAATGAAAGTGTTACATTTGCATTTCCTAACAGTAAATTGTGGATTACTACTATTTGGGGCTGTCAGGCTACTTACTGTACTTGAGATTTCAGCCACTGTGTTAAAAGTGCTTAAGGGAATTTAACTCTGCAGTCAATTTCATGTTGTTCAGCACTTTGTTTTGTAGCAACATTACAAAATGAGCTTTTTTTTCCACAAATTCAGTGGTGAAAATAATTACTTGTACCAGTCCGAGTGGTTTATCAAGCATGTCTTTTGTATCAAATTTGTTTTTTTGAAGAATAAAAACATTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU932713 lncRNA upstream 32797 55184604 ~ 55184824 (+) True G820211
TU932675 lncRNA upstream 59353 55157091 ~ 55158268 (+) True G820175
TU932673 lncRNA upstream 60894 55155407 ~ 55156727 (+) True G820174
TU932676 lncRNA upstream 68341 55127150 ~ 55149280 (+) True G820176
TU932662 lncRNA upstream 107422 55108836 ~ 55110199 (+) True G820163
TU933216 lncRNA downstream 35989 55260361 ~ 55260802 (+) True G820673
TU933261 lncRNA downstream 74404 55298776 ~ 55299160 (+) True G820717
TU933278 lncRNA downstream 83342 55307714 ~ 55307954 (+) True G820734
TU933286 lncRNA downstream 88668 55313040 ~ 55313418 (+) True G820742
TU933304 lncRNA downstream 96076 55320448 ~ 55321476 (+) True G820760
XM_021616281.2 mRNA upstream 10256 55192353 ~ 55207365 (+) False LOC110532404
XM_036988349.1 mRNA upstream 10256 55193554 ~ 55207365 (+) True LOC110532404
XM_036988340.1 mRNA upstream 283051 54926728 ~ 54934570 (+) True twist3
XM_021616270.2 mRNA upstream 911448 54295022 ~ 54306173 (+) True LOC110532395
XM_021616271.2 mRNA upstream 969706 54245323 ~ 54247915 (+) False LOC110532396
XM_021616290.2 mRNA downstream 103740 55328112 ~ 55372587 (+) True LOC110532408
XM_021616291.2 mRNA downstream 150803 55375175 ~ 55410299 (+) True LOC110532409
XM_036988355.1 mRNA downstream 194951 55419323 ~ 55425566 (+) True LOC110532410
XR_002474920.2 mRNA downstream 248368 55472740 ~ 55482776 (+) False LOC110533022
XM_021616299.2 mRNA downstream 306661 55531033 ~ 55647541 (+) False dlgap4a
TU932380 other upstream 490245 54726871 ~ 54727376 (+) True G819897
TU929242 other upstream 2490101 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 2891981 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 3871127 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 4138679 51078447 ~ 51078942 (+) True G815610
TU933208 other downstream 8886 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 306665 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 473268 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 749670 55974042 ~ 55975316 (+) True G821363
TU934014 other downstream 837334 56061706 ~ 56063655 (+) True G821409

Expression Profile