Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003711 |
| length | 691 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 6 |
| gene id | XLOC_001873 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 6318227 ~ 6375394 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006936 | muscle contraction | biological_process |
| GO:0007015 | actin filament organization | biological_process |
| GO:0005865 | striated muscle thin filament | cellular_component |
| GO:0005884 | actin filament | cellular_component |
| GO:0051015 | actin filament binding | molecular_function |
| id | description |
|---|---|
| ko04260 | Cardiac muscle contraction |
| ko04261 | Adrenergic signaling in cardiomyocytes |
| ko05410 | Hypertrophic cardiomyopathy |
| ko05414 | Dilated cardiomyopathy |
| ko04812 | Cytoskeleton proteins |
| id | description |
|---|---|
| ZDB-GENE-040625-114 | Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and muscle contraction. Located in striated muscle thin filament. Is expressed in adaxial cell; cardiovascular system; epiphysis; musculature system; and somite. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1A and nemaline myopathy 4. Orthologous to human TPM2 (tropomyosin 2). |
| ensembl_id | ENSDART00000163722 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005819 | lncRNA | upstream | 223543 | 6116294 ~ 6116936 (+) | True | XLOC_001871 |
| TCONS_00005677 | lncRNA | upstream | 459246 | 5880700 ~ 5881233 (+) | True | XLOC_001868 |
| TCONS_00005818 | lncRNA | upstream | 546953 | 5788407 ~ 5793526 (+) | True | XLOC_001867 |
| TCONS_00005676 | lncRNA | upstream | 752249 | 5587960 ~ 5588230 (+) | True | XLOC_001864 |
| TCONS_00003688 | lncRNA | upstream | 797389 | 5529734 ~ 5543090 (+) | True | XLOC_001863 |
| TCONS_00005820 | lncRNA | downstream | 276802 | 6628619 ~ 6628997 (+) | True | XLOC_001877 |
| TCONS_00005821 | lncRNA | downstream | 292580 | 6644397 ~ 6644775 (+) | True | XLOC_001878 |
| TCONS_00005822 | lncRNA | downstream | 332601 | 6684418 ~ 6684796 (+) | True | XLOC_001880 |
| TCONS_00005823 | lncRNA | downstream | 402453 | 6754270 ~ 6755766 (+) | True | XLOC_001884 |
| TCONS_00003730 | lncRNA | downstream | 731922 | 7083739 ~ 7102754 (+) | False | XLOC_001887 |
| TCONS_00003705 | mRNA | upstream | 26574 | 6121558 ~ 6313905 (+) | True | XLOC_001872 |
| TCONS_00003704 | mRNA | upstream | 27373 | 6121558 ~ 6313106 (+) | False | XLOC_001872 |
| TCONS_00003701 | mRNA | upstream | 306082 | 6013076 ~ 6034397 (+) | False | XLOC_001870 |
| TCONS_00003712 | mRNA | downstream | 31453 | 6383270 ~ 6409781 (+) | True | XLOC_001874 |
| TCONS_00003713 | mRNA | downstream | 144368 | 6496185 ~ 6518065 (+) | True | XLOC_001875 |
| TCONS_00003714 | mRNA | downstream | 261462 | 6613279 ~ 6618833 (+) | True | XLOC_001876 |
| TCONS_00003715 | mRNA | downstream | 273968 | 6625785 ~ 6630364 (+) | False | XLOC_001877 |
| TCONS_00003716 | mRNA | downstream | 289697 | 6641514 ~ 6646684 (+) | False | XLOC_001878 |
| TCONS_00003693 | other | upstream | 570867 | 5744923 ~ 5769612 (+) | False | XLOC_001866 |
| TCONS_00003679 | other | upstream | 1188078 | 5151349 ~ 5152401 (+) | True | XLOC_001855 |
| TCONS_00003675 | other | upstream | 1192897 | 5135842 ~ 5147582 (+) | True | XLOC_001854 |
| TCONS_00003668 | other | upstream | 1352996 | 4986050 ~ 4987483 (+) | True | XLOC_001850 |
| TCONS_00003658 | other | upstream | 1847121 | 4493277 ~ 4493358 (+) | True | XLOC_001842 |
| TCONS_00003731 | other | downstream | 731954 | 7083771 ~ 7210108 (+) | False | XLOC_001887 |
| TCONS_00003739 | other | downstream | 1221499 | 7573316 ~ 7578051 (+) | True | XLOC_001890 |
| TCONS_00003759 | other | downstream | 1991371 | 8343188 ~ 8343305 (+) | True | XLOC_001906 |
| TCONS_00003778 | other | downstream | 2510704 | 8862521 ~ 8868895 (+) | True | XLOC_001921 |
| TCONS_00003779 | other | downstream | 2517651 | 8869468 ~ 8880126 (+) | False | XLOC_001922 |
