RNA id: TCONS_00003716


Basic Information

Item Value
RNA id TCONS_00003716
length 2816
RNA type mRNA
GC content 0.48
exon number 9
gene id XLOC_001878
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6641514 ~ 6646684 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAATTCCTCAGAGTGACAAACGAACGAGTAGAGTGAACAGTGATTATCGACTTTAGCAACTTGTTTTGCATCTCAAATGGCAAATAACACGTCAGCTGCGTTTTTTACTCGACTTAATTTGATTAAGACAGTATTTGTCAACCATAATCATCAAAGTGACACGATGGCTTCTCCTACACCTCCTACCGTGATGAGAAGCCCAACAGAAAATCCAGAGAAAAGGAGGAAAGGGAATAAAGCCTCTGCTTTCTTCAAGAGAGCATGGAAGGCTGTGAAGCGCCCTTTCCTTTGCTGTGGCCGGAACAGAGTGGCTCCATTTGAACCACAGTCGGATATCGATGATTGCGAGCATCTGCCTGTTCCAGGTCCCTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCAGGCCAGGTCTGTGAAGACCCTCAGCCgttgagtgttccgggcccctCCAGGATCAAGCAAACAGCAGATCCGGCCCGTCCTGAGTTCTCAAAGGCCCTCACAGGTCATGTTGACACTGAGCTGGTGTGTCTGCCAGGCCAGATCTTGGAAGATCCTCAGCCAATCAGTGTCCATGGCCTCACCAATATTAAGAACATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTGATATTGATGGGACTGATGaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTCAAGAGAGTATGGAAGGCTGCAACGCGCCCTTTCCTGTGCTGTGACACAGATGTAGTCCAGCATCTTACACCACAACCTGAACCTGAACCTGAACCAGAGTCAGAGCCAGAGCCAGAGTCAGAGTCAGAGCCAGAGTCAGAGCCAGAGTCAGAGTCAGAGTCCGAGTCCGAGGCCGAGTCCGAGCTCCGGCCAGAGTCTGAGCCAGGGCTGGAGAATGAAGCTGACCCTGAGGCAGTGCCTGCTGAAATTATGCCTGAAATCGCAGAACCCGCTGACCCTGAGTCAGTATGTCTGCCAGGCCCAGCGCCTGAAGAGCCTAAAGAGGCTTCTGTGCCCACTCGTAGATTTGATCTGTCTGACTTTAAAGTAGACAGCATGATTGGAGAAGGAGCTTTTGGCAAGGTGTATGTGGCATCTCACAAACTTCGTGAAAGTGAAAAGGTTGCCCTGAAGTCTATAACCAAGCTTAAACAGGACCAATATCTCAACATTGATGGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAGGTTGATGAATGCTCCGCAATGCCCAAATATCATTGGATTACACGACTGGATTGAGAATGAGAGCAGCTTCCTTCTCGTCTTGGAGTACCCAGAGTCAAGCCGGACCTTGGCTGATTACATCACAGTGAGATGGCGAATTAGTGAAAAGCGAGCACGCCGGTTAATTCGTCAGTTGATCCGAGCTGTAAAGTTCTGCACTGAGCGTGGAGTTTTCCATGGCGATATCCACACGGAGAACATCCTGGTGACGAAACCCCGATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTACCAGCGAGCCTTTCAACAGCAGTGAATTTCGAGGAGCCAGTGGGATCACGCCACCTGAGGTTTTCAAGGAGCCCACATTCTATGCTGACCCAGCAAACATTTGGCAAATAGGCAGCGTGCTGTACGATATATTGCATGCAGATTTGCCCTTTTCTGACAAAGATTCAATAATGTTTGCATCCCTTGAGACACACCCCAGGTTAACTCCAGTATGCCAGAACCTGCTTTCCCAGTGTTTGGCCCGCTGTCCACTTGAGCGGCTGCAGTTACATCAGTTAGAAAAGCACCGGTGGTTCAATCCAACGACCCCAAATCCTGCGCAGCAGTTAAACAAGAGGAGaaaacaCTAAAGTGAGAAAGTGGAAAGCACAATTAAAGTCACTAAACTAGCATTATCAGTTATTAATtactccctcatgtcattccaaacccctcaGATCTTACTTTTCAGTGTCAGTGTGTTGATGAGAGCTCTGtcctgcactgtgtgtgtgtccactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttatccgtcagcagtgcgacacacatCCAGTGCAGTACAGGACTTCTGaactcattatttttgttttaatatttttgtggttttCTTTCTGCATTTAAGAAGTTTCTCTTCAAAATGACAGCTGTAGCTCCAAACCCCTGACACCTTTCCtcatcttcagaaaacaaatgaaaagattTGAGATGAAATCAAATCATCACACCATGAGAGCTCTGtcctgcactgtgtgtgtgttcactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatacagtgcactgCGCTCTTCTGGACGTGCGGtttgagggtcagagagctctcagatttcatctcaaatgttttaatttgggTTCTCAATATAAACTAAACATGAATTTGAACTAAGGACATGAgctgagtaattaatgacaataatggtAATGAATAGTGCCtagaccgcagctctgcacaagacctttggccacaggagaaatggtcgtacccaaccgagcctggtttctctcgaggttttttccttcacttttgtcaattggtgaagttttgttcctcgccactgtcgccgctggcttgcttggttgggacttgtggagctgcgcatcgatggatttgct

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000150003

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005820 lncRNA upstream 12517 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00003709 lncRNA upstream 291238 6340468 ~ 6350276 (+) False XLOC_001873
TCONS_00005819 lncRNA upstream 524578 6116294 ~ 6116936 (+) True XLOC_001871
TCONS_00005677 lncRNA upstream 760281 5880700 ~ 5881233 (+) True XLOC_001868
TCONS_00005818 lncRNA upstream 847988 5788407 ~ 5793526 (+) True XLOC_001867
TCONS_00005822 lncRNA downstream 37734 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00005823 lncRNA downstream 107586 6754270 ~ 6755766 (+) True XLOC_001884
TCONS_00003730 lncRNA downstream 437055 7083739 ~ 7102754 (+) False XLOC_001887
TCONS_00005678 lncRNA downstream 1162027 7808711 ~ 7809243 (+) True XLOC_001897
TCONS_00005824 lncRNA downstream 1196722 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00003715 mRNA upstream 11150 6625785 ~ 6630364 (+) False XLOC_001877
TCONS_00003714 mRNA upstream 22681 6613279 ~ 6618833 (+) True XLOC_001876
TCONS_00003713 mRNA upstream 123449 6496185 ~ 6518065 (+) True XLOC_001875
TCONS_00003712 mRNA upstream 231733 6383270 ~ 6409781 (+) True XLOC_001874
TCONS_00003710 mRNA upstream 266385 6340478 ~ 6375129 (+) False XLOC_001873
TCONS_00003717 mRNA downstream 18227 6664911 ~ 6670283 (+) True XLOC_001879
TCONS_00003718 mRNA downstream 34839 6681523 ~ 6686975 (+) False XLOC_001880
TCONS_00003719 mRNA downstream 50685 6697369 ~ 6702812 (+) True XLOC_001881
TCONS_00003720 mRNA downstream 82986 6729670 ~ 6734797 (+) True XLOC_001882
TCONS_00003721 mRNA downstream 101036 6747720 ~ 6753115 (+) True XLOC_001883
TCONS_00003693 other upstream 871902 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 1489113 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 1493932 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 1654031 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 2148156 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003731 other downstream 437087 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 926632 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 1696504 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 2215837 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 2222784 8869468 ~ 8880126 (+) False XLOC_001922

Expression Profile

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