RNA id: TCONS_00003797


Basic Information

Item Value
RNA id TCONS_00003797
length 553
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_001934
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 9550419 ~ 9571012 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCGCTTTCTGCAGACCCTGGAAGTGGAACTGGAGAGCCTTCATAAACAGGTGGCAGCTCTGGAAGGTAACCTGAGTGAGACGGGGCAGAAATACACCCTGGAGATGGAGCGTCTGCAGGCCACCCTGGCCCAGCTGGAGGACAGCCTGTCTCAGCTGCGTCTGGACATGCAGCGCAACAAGACTGACTACGAGCAGCTCCTGCGCATCAAGCAGAACCTGGAGATGGAGATCGCCACCTACAGGAGGCTGCTGGAGGGCGAGGAGACGGTTAAAGAGATTCCTCCACCACCCAAGAGTGAGTTCTCATCCATTCTCAATGTGTCACTTGTTGGATTCAGCAAACAGTAGATCAAATATGCACAAACTAAACTTGCTTCTAACAAACATTTGACTAGAAGTGCATATTGCATTAGCTGAATGTAAAAACTGTAACATGGTATTATCTCAGTGGGATAGTTTTTAGttgtaaaatttgcatttaatttactcCATCTAATGTGTAGGTGATTTTTTTATcctcagtagaacattaaagaagtttttagctgaa

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2830 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament.

Ensembl:

ensembl_id ENSDART00000136281

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005829 lncRNA upstream 435203 9122393 ~ 9125863 (+) True XLOC_001926
TCONS_00005681 lncRNA upstream 787407 8773436 ~ 8773659 (+) True XLOC_001919
TCONS_00005828 lncRNA upstream 845318 8709485 ~ 8715748 (+) True XLOC_001917
TCONS_00005680 lncRNA upstream 910211 8646959 ~ 8650855 (+) True XLOC_001913
TCONS_00003761 lncRNA upstream 1152191 8402096 ~ 8408875 (+) True XLOC_001907
TCONS_00005830 lncRNA downstream 80829 9646503 ~ 9661896 (+) False XLOC_001935
TCONS_00005682 lncRNA downstream 83698 9649372 ~ 9661381 (+) False XLOC_001935
TCONS_00005683 lncRNA downstream 83930 9649604 ~ 9661896 (+) False XLOC_001935
TCONS_00005684 lncRNA downstream 83975 9649649 ~ 9661896 (+) True XLOC_001935
TCONS_00005831 lncRNA downstream 257523 9823197 ~ 9835446 (+) True XLOC_001938
TCONS_00003794 mRNA upstream 141072 9410304 ~ 9419994 (+) True XLOC_001933
TCONS_00003793 mRNA upstream 165846 9372702 ~ 9395220 (+) True XLOC_001932
TCONS_00003790 mRNA upstream 190122 9346383 ~ 9370944 (+) False XLOC_001931
TCONS_00003792 mRNA upstream 191322 9346450 ~ 9369744 (+) True XLOC_001931
TCONS_00003789 mRNA upstream 275892 9281991 ~ 9285174 (+) True XLOC_001930
TCONS_00003798 mRNA downstream 29901 9595575 ~ 9649735 (+) False XLOC_001935
TCONS_00003799 mRNA downstream 29901 9595575 ~ 9655820 (+) False XLOC_001935
TCONS_00003800 mRNA downstream 35913 9601587 ~ 9644719 (+) False XLOC_001935
TCONS_00003801 mRNA downstream 131423 9697097 ~ 9810597 (+) True XLOC_001936
TCONS_00003805 mRNA downstream 644781 10210455 ~ 10274162 (+) True XLOC_001942
TCONS_00003791 other upstream 212560 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003779 other upstream 680940 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003778 other upstream 692171 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003759 other upstream 1217761 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003739 other upstream 1983015 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003802 other downstream 160100 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003803 other downstream 347389 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003821 other downstream 1236031 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003825 other downstream 1257081 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003827 other downstream 1407136 10972810 ~ 10987302 (+) False XLOC_001952

Expression Profile

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