RNA id: TU1081124


Basic Information

Item Value
RNA id TU1081124
length 1086
RNA type TUCP
GC content 0.52
exon number 5
gene id pan3
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15439415 ~ 15455911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaacaacaacaacaagggtgAACGAGGCTCAACAACaggctagctactagctaggccAGCTACATGGGTAGCGACAAAAACGACCAGGATTTATCAAACGCGATGTCCTTATCATCTAGACGTATATGTGAGTGATGTAATTTTAGGTTTGGACGAATCATATTTGCTGTTGCATATCGCTTTGTATTTACATTAATCTAACCCAGCTCGAGAGCAAGCTAACTAGCAATCGACGTCTCTCTATGTTCGAATATTTTCCGGCGGCAGCAGCGGTGCCATGAACAGTGGACTCCCAGCTTCAGCTGCTCCGCTCGGGGGTGTCGGAATACCCTGCGTCAAGGTGAAGTTCTGCCGATACTACGCAAAGGACAAGACTTGCTTTTATGGGGACGAGTGTCAGTTTTTGCACGAGGAACCGTCCATGGCAAACATGTCTCTTCACGGTGGAGGAAGCCCTGTCCCTTTATCCATGTCAGGAGGAGCCGTGACGGCAGCGGGGTATCCGCTTAGTGCACCCCCGGCCTGCCCGGTAGGGGTGGCGACCGTCACCAAAAAGAGCGACTCTCTTGGGTCTGCAGGCACGGCTCTGGATGGACAGCTGTTAACCATCCCTGGTATGGAGGGTGGGACTGATGCTAATCTGACCAACTCCTACTTCAGCAGCAGCTTCATTGGGGTCAACGGCTTCGGGAGCCCCGCAGAGTCTAAATACTCAATGATGCAGagaatgaccagcagcagcagttCTCCCAGTCTCCTTGATGATGGTGCAAAGAACTTTAGCCACAGCGCTCACGATCTATTCCATGGAACCCTGGCAGTTGGACCAGGTCAGAGTTGTGGGTCGATGGAAAACTCTCCGTGGACAACACAGTCTTCATTCCCTCTTCCTCTATGTCCTCTTCCTGATCCAGTTAGTTCTCCCATGTCCTCACTCTTCAGTGACTTTGGTGCTCTGAGCATATCACAAAGGAGAAAGGCTCCCAACCCTACAGCCAATGAGTTCATCCCTAAGGGGGTTCCCCGCATGGCCACTATGGTCCAGTCCAGTGTTCCAGCCTTCCCCTTGCCCCTCTTCCCCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1081139 lncRNA downstream 22704 15428382 ~ 15428623 (-) True G948145
TU1080880 lncRNA downstream 42201 15408804 ~ 15409126 (-) True G947941
TU1080875 lncRNA downstream 44128 15406985 ~ 15407199 (-) True G947936
TU1080872 lncRNA downstream 46314 15402473 ~ 15405013 (-) True G947933
TU1080832 lncRNA downstream 82131 15368887 ~ 15369196 (-) True G947899
TU1081145 lncRNA upstream 1100 15456844 ~ 15457463 (-) True G948149
TU1081146 lncRNA upstream 21617 15477361 ~ 15478097 (-) True G948150
TU1081164 lncRNA upstream 30897 15486641 ~ 15486879 (-) True G948163
TU1081168 lncRNA upstream 38600 15494344 ~ 15494625 (-) True G948167
TU1081169 lncRNA upstream 40959 15496703 ~ 15496903 (-) True G948168
XM_021620270.2 mRNA downstream 182670 15251271 ~ 15268657 (-) True LOC110535333
XM_036936642.1 mRNA downstream 230297 15219006 ~ 15221030 (-) True LOC118937468
XM_021620269.2 mRNA downstream 368560 15080524 ~ 15082767 (-) True LOC110535332
XM_021620266.2 mRNA downstream 553748 14884317 ~ 14897579 (-) False mtfr1
XM_021620264.2 mRNA downstream 610668 14830974 ~ 14840659 (-) True LOC110535328
XM_021622321.2 mRNA upstream 24754 15480498 ~ 15485495 (-) False pdx1
XM_036934990.1 mRNA upstream 36093 15491837 ~ 15494086 (-) False si:ch211-140b10.6
XM_021620281.2 mRNA upstream 36093 15491837 ~ 15497193 (-) True si:ch211-140b10.6
XM_036934992.1 mRNA upstream 70693 15526437 ~ 15529967 (-) False rpl21
XM_021620286.2 mRNA upstream 70693 15526437 ~ 15530037 (-) True rpl21
TU1080827 other downstream 85026 15365950 ~ 15366301 (-) True G947894
TU1080652 other downstream 241730 15206431 ~ 15209597 (-) True G947750
TU1080269 other downstream 564603 14884335 ~ 14886724 (-) False mtfr1
TU1079569 other downstream 1135641 14312512 ~ 14315686 (-) True ly86
TU1078013 other downstream 3057189 12393397 ~ 12394138 (-) True G945345
TU1081160 other upstream 24924 15480668 ~ 15485240 (-) False pdx1
TU1081161 other upstream 24924 15480668 ~ 15484794 (-) True pdx1
TU1081325 other upstream 345031 15800775 ~ 15801563 (-) True LOC110535357
TU1081428 other upstream 418585 15874329 ~ 15876494 (-) False LOC110536560
TU1081438 other upstream 441708 15897452 ~ 15899014 (-) True LOC110536560

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045565 False 2757 processed_transcript 0.50 14 NC_007135.7 21720480 ~ 21748700 (+)