RNA id: XM_021622321.2


Basic Information

Item Value
RNA id XM_021622321.2
length 1565
RNA type mRNA
GC content 0.57
exon number 2
gene id pdx1
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15480498 ~ 15485495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGCCGATGCGAGTAGGCTATTAGGCCTATACATCTGGTTATCGATTTCCCCCTCTATCAGTCGCCTATTGATAAGAGAACTAGGTTCATATAAATGTTCAATGGCTGACATTGTTCTACGGCAGTGAAATCTGCATTCAGGCTTCACGAGCGCACTGCATTCCCATCGTTTCTTCTTCTTTTCCATCAAGAGAGCCAAAGCCGTGATGATACTGACATTGTGGAGGCACTTTCTGTTTGCGTTTCTCTTCGTGCTTTTTCTATGCGGGCCGCAATCTCTCTGATTAGTTCGATGGCATTAGCCCCTGTCCGCTCGCAGCGATAGGACCCGCAGATTCCGCTGCTCACCTGTATATCGCTGCATTAGGACCAACTTGCGGCAGGTGGGTCTCAGATATCCGCCGTCAAACAGTGGAGTGTTTGCCGAGGGCATTGATTTGTGCACGGTCAATTCTGTTCAATTATTGTCGCTCCGCGGGGCAGAGAATACAGACACGAATAGAAACTAAGGTGACGACTTCTCAGTTTTGTGTAATCAGTGAAACCAATGGCTTAGGTGCAGCAGGGTCACGTGGTGGCGGTGACACACCTGCGCAGGGCCTATAGCGGAGACAGATGCACGAGCAGCACAGGTAGAGCAGAGCACAAGGTTCCACGCAGCAAAGGCAATAGGGCGCAtgtacatgtgcacacacacccGTTGGATAGCCTTGGCCCTCGGCAGTCATGAATCGAGAAGAGCACTACTATTCCCCCGCGCAGCTGTTCAAAGACCCCTGCCCCTACCAGAGACCCCACAGCGAGGACTTCAGCCACAGCCCTCCGCCCTGCCTCTACATGGGCCGGCAGGCTCAGTCCGTCTATTCCTCGCCTTCCATCGGAGGGCTAGACCAGGCAAGTCTCCCTGATATTGCTCCGTACAGTATGCCAATGCGAGAGGACCCAGGTGTGCCGCAGCTCCACCACCCCCAGGCGCCCCAGCAGACTATCCAACCGGGGGGTTACGGAGACCCGGGGGAGCTGGCTCTGTGTGCCGATAGGAACAGATACCACCTGCCTTTCCCCTGGATGAAAAGCACCAAGTCTCACGTGCAAACCTGGAAGGGACAGTGGGCAGGCCACTACATGGAGGCAGAGGAGAACAAGCGGACAAGGACTGCCTACACGCGAGCCCAGCTcctggagctggagaaggagTTCCTGTTCAACAAGTACATTAGCAGGCCGCGGCGTGTAGAGCTGGCCCTCACCCTCAGCCTCACAGAGAGACACATCAAGATCTGGTTCCAGAACCGACGGATGAAGTGGAAGAAGGAGGAGGACAAGAAAAGAGTGAGGGGGGTCGACCCCGAGCAGGACTCGTCCATTACGTCAGGGGACCTGAAGgatgaggctgggctgggggtcgGAGGGGCTGGGTTGGGGGTCGGGGGGGCAGGGGTGGGGGTCACGTTGGCAGGGGCTCCCACACCGGCACctctcaccactaccaccacacccCCCTCACCCCtacactcccactcccactcccactccctgtCAGGTTCGAGAGACTCGGCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1081146 lncRNA downstream 2401 15477361 ~ 15478097 (-) True G948150
TU1081145 lncRNA downstream 23035 15456844 ~ 15457463 (-) True G948149
TU1081139 lncRNA downstream 51875 15428382 ~ 15428623 (-) True G948145
TU1080880 lncRNA downstream 71372 15408804 ~ 15409126 (-) True G947941
TU1080875 lncRNA downstream 73299 15406985 ~ 15407199 (-) True G947936
TU1081164 lncRNA upstream 1146 15486641 ~ 15486879 (-) True G948163
TU1081168 lncRNA upstream 8849 15494344 ~ 15494625 (-) True G948167
TU1081169 lncRNA upstream 11208 15496703 ~ 15496903 (-) True G948168
TU1081237 lncRNA upstream 133157 15618652 ~ 15625408 (-) False G948225
TU1081236 lncRNA upstream 137805 15623300 ~ 15625408 (-) True G948225
XM_036934989.1 mRNA downstream 24587 15439415 ~ 15455911 (-) False pan3
XM_036934988.1 mRNA downstream 24593 15439415 ~ 15455905 (-) False pan3
XM_021620270.2 mRNA downstream 211841 15251271 ~ 15268657 (-) True LOC110535333
XM_036936642.1 mRNA downstream 259468 15219006 ~ 15221030 (-) True LOC118937468
XM_021620269.2 mRNA downstream 397731 15080524 ~ 15082767 (-) True LOC110535332
XM_036934990.1 mRNA upstream 6342 15491837 ~ 15494086 (-) False si:ch211-140b10.6
XM_021620281.2 mRNA upstream 6342 15491837 ~ 15497193 (-) True si:ch211-140b10.6
XM_036934992.1 mRNA upstream 40942 15526437 ~ 15529967 (-) False rpl21
XM_021620286.2 mRNA upstream 40942 15526437 ~ 15530037 (-) True rpl21
XM_036934993.1 mRNA upstream 62183 15547678 ~ 15570598 (-) False wasf3b
TU1081124 other downstream 24754 15451327 ~ 15455744 (-) True pan3
TU1080827 other downstream 114197 15365950 ~ 15366301 (-) True G947894
TU1080652 other downstream 270901 15206431 ~ 15209597 (-) True G947750
TU1080269 other downstream 593774 14884335 ~ 14886724 (-) False mtfr1
TU1079569 other downstream 1164812 14312512 ~ 14315686 (-) True ly86
TU1081325 other upstream 315280 15800775 ~ 15801563 (-) True LOC110535357
TU1081428 other upstream 388834 15874329 ~ 15876494 (-) False LOC110536560
TU1081438 other upstream 411957 15897452 ~ 15899014 (-) True LOC110536560
TU1082425 other upstream 504139 15989634 ~ 15994884 (-) False drd3
TU1082470 other upstream 564488 16049983 ~ 16050305 (-) True G949329

Expression Profile