RNA id: TCONS_00045565


Basic Information

Item Value
RNA id TCONS_00045565
length 2757
RNA type processed_transcript
GC content 0.50
exon number 14
gene id XLOC_022923
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21720304 ~ 21748700 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCCGAAGTTTTTAAACATACTCTGCTGCTAAACATCGACTCGAGTCTCTATGTGCGAGTGTCTTCCGGcgggagcagcagcagcagcggtgCCATGAACAGTGGACTCCCCGCTTCAGCTGCTCCGCTCGGGGGTGTCGGGATACCCGGTGTGAAAGTTAAATTCTGTCGCTATTATGCTAAAGACAAGACTTGTTTTTACGGAGATGAATGCCAGTTTCTGCACGAGGACCCGTCCATGGCGAGCCTTTCTCTGCACGGTGGTGGTACAGGTGCTGGCGGCGGAGGAGGAGGAAGCCCCGTGTCTTTATCTCTCGCCGGAGGAGCAGTGACCGCGGCGGGATACGTGCTCGGGGGTAGCGCGGCTAGCGGCGTACCTGCGAGCGTTTCCAAAAAGAACGATTCTCTCGGCCCCGAGGGACAGCTGTTGTCCATCCCTGGGATGGAGGGAGGTGCTCTGAATGAAGCCAGTCTGACCAACTCGTACTTCAGCAGCACCTTTATTGGGGTCAACGGATTTGGAGGCCCAGCAGAATCCAAATATTCAATGATGCAGAGGATGACCAGCAGTAGCAGTTCTCCAAGTCTGCTGAATGATGGTGCCAAGAGCTATAGCCACAGCACACACGATCCAGTAAATTCCCCAACATCATCTCTCTTCAGTGACTTTGGTGCTTTAAGCATATCGCAGAGGAGAAAGGCTCCTAACCCTGCAGCCAGTGAGTTTGTCCCAAAAGGGGCTCCACGAATGGCCTCCATGTCTCAGACAACCGTGCCAGCATTCGCCTCTCCCATTTTTCCTCATCCTGGATTGAGCAGCTCCACAGCGTCCGCTCTTGCACCTGGTATGTCTCTCTCTGCCGGGTCATCTCCGCTTCACTCGCCCAAAATCACCCCTCACACCTCCCCAGCTCCTCGGCGGCGCAGCCACAcacccaaccccaaccctaacccagCCAATTACATGGTGCCCACCACTGCGCCTGACCAGGCAGGCGGAGCCCACATAATTCAAAAGGAGACTGTAGGCGGAACAACCTACTTCTATACCGATAACACCCCTGGAACCCCTTCCTCCCCCTAACCGTCTTCAGAAAACCAGCAATTTCAGTTACATCACTTCCTGTTACAAGGCAGTCAACAGCAAAGATGACCTGCCTTACTGCCTCAGGAGGATACATGGCTTCAGGCTGGTCAACACCAAGTGTATGATGCTGGTAGACATGTGGAAGAAAATTCAGCACTCCAATACTGTGACCCTCCGAGAGGTCTTCACCACCAAAGCTTTTGGAGACCACTCACTAGTTTTCTCCTATGACTTCCATGCGGGAGCAGAGACTATGTTCAGCAGGCACTTCAATGATCCAGCAGCGGATTCTTACTTTACCAAGAGAAAGTGGGGACAACATGAGCTCCCTCCTCCACGGCAGCATGCAGGCCTGTTACCAGAGTCTCTGATTTGGGCCTACATTGTCCAGCTGAGTTCAGCACTGCGCACCATTCACACAGCTGGACTAGCCTGCAGGGTTATGGACCCCAGTAAGATCCTCATCACTGGAAAAACACGGTTACGGGTCAACTGTGTAGGAATGTTTGATGTCTTAACATTTGACAATAGTCAGACCAACCACTTGGCGCTGATGCCCCAGTACCAGCAAGCAGATCTCATCTCCCTGGGGAAGGTGGTGTTGGCTCTGGCGTGTAACTCTTTAGCTGGCATTCAGAGAGAGAATCTGCAGAAGGCCATGGAGCTGGTGTCAATCAACTACTCGTCTGACCTCAAGAACCTTATTCTGTATCTGCTGTCAGAGCAAAGCCGTCTGCGCAGCGCGCATTATCAGATTTTGAGAGGAtggatttttgttgtttatttttattttttgtatggcTCTCGTGATAGGAACCAAAGAACTGGACCACACTAGCAAGGGAAACCAGTTCGCTGTGATGGTGGAATGAATGTCCTCTTCTTAAGCGTCCACTTCTTCATTCTTTTCGTTTCTCACATCCGCTAGTATTGGTTTGGATCTAGTGAATCTCAGTAGAGCTCTCTTGTGTTGTTCCCTTTCCCTCACCAAGCTATTGTACAGAGATGCATGATGGGATGTTTCTCACCTCACTCTGTGGACCAATCCCAGCAAAGGACGCTTGGGATTGcatcagtttctttctttctatgaTTTGATCATGCGACAACATCCGTAAATCAGTTTGAAATTCGCTCAGGATAATGATGATATGCCAATGGCTGAATGTGTCTGACCTGTCATTGGTGACTGCCCGATCTGTGGGTCGAGGACCCGTGCAGGACTTGCAGCACAGATTGGGGTGTGCAGGATACAGCAGGCCAGAACTGCAGTGAGGATGCTGTGAGTTCAGTAATCTACCCTCTCctctacccccccccccccctcttctttattttctttttaaagtaaacCAATCAGTAATATAACTTGGTGAACATGGTGCCAAGCCCGTATCTCTTtcttcatcacacacacaaacattaacaCACACCTTTTAGTGGCCGATCTGTCATATCATGTACTCCGATTCCAGTGGAGCGCactccagacacacacacacacacacacacacacacacacacacacacacacacacacatacactcacatacaTGAAGTCCTCCTTCACAACCCCAGTATGTTTTATGCCCTTCTTGTGTTTGtcacatttttttgcaatatttgtgtGTACAGCAGTATTTTAATAAAGAGTAAATAAAAGTTAA

Function

GO:

id name namespace
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA biological_process
GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly biological_process
GO:0006397 mRNA processing biological_process
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening biological_process
GO:0031251 PAN complex cellular_component
GO:0000932 P-body cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004535 poly(A)-specific ribonuclease activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03018 RNA degradation
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-070928-13 Predicted to enable ATP binding activity; RNA binding activity; and metal ion binding activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm. Predicted to be part of PAN complex. Predicted to be active in P-body. Orthologous to human PAN3 (poly(A) specific ribonuclease subunit PAN3).

Ensembl:

ensembl_id ENSDART00000137952

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045553 lncRNA upstream 217911 21501859 ~ 21502569 (+) True XLOC_022915
TCONS_00046804 lncRNA upstream 412466 21307567 ~ 21308014 (+) True XLOC_022913
TCONS_00045547 lncRNA upstream 540937 21174928 ~ 21179543 (+) True XLOC_022910
TCONS_00045535 lncRNA upstream 802068 20916745 ~ 20918412 (+) False XLOC_022904
TCONS_00045521 lncRNA upstream 1643184 20062044 ~ 20077296 (+) True XLOC_022896
TCONS_00046969 lncRNA downstream 134245 21882945 ~ 21883972 (+) True XLOC_022924
TCONS_00046970 lncRNA downstream 320156 22068856 ~ 22071276 (+) True XLOC_022928
TCONS_00045573 lncRNA downstream 737010 22485710 ~ 22486773 (+) False XLOC_022930
TCONS_00045574 lncRNA downstream 737010 22485710 ~ 22488167 (+) False XLOC_022930
TCONS_00045576 lncRNA downstream 975624 22724324 ~ 22737860 (+) True XLOC_022931
TCONS_00045562 mRNA upstream 33774 21684189 ~ 21686706 (+) True XLOC_022922
TCONS_00045561 mRNA upstream 39056 21676921 ~ 21681424 (+) True XLOC_022921
TCONS_00045560 mRNA upstream 77622 21640635 ~ 21642858 (+) True XLOC_022920
TCONS_00045558 mRNA upstream 93187 21622373 ~ 21627293 (+) True XLOC_022918
TCONS_00045557 mRNA upstream 94955 21621654 ~ 21625525 (+) False XLOC_022918
TCONS_00045567 mRNA downstream 225229 21973929 ~ 21978844 (+) True XLOC_022925
TCONS_00045568 mRNA downstream 272975 22021675 ~ 22031079 (+) False XLOC_022926
TCONS_00045569 mRNA downstream 273409 22022109 ~ 22030868 (+) True XLOC_022926
TCONS_00045570 mRNA downstream 291264 22039964 ~ 22059340 (+) False XLOC_022927
TCONS_00045571 mRNA downstream 307686 22056386 ~ 22059801 (+) True XLOC_022927
TCONS_00045559 other upstream 90640 21629725 ~ 21629840 (+) True XLOC_022919
TCONS_00045555 other upstream 186048 21530004 ~ 21534432 (+) True XLOC_022916
TCONS_00045551 other upstream 447752 21272612 ~ 21272728 (+) True XLOC_022912
TCONS_00045533 other upstream 932196 20788168 ~ 20788284 (+) True XLOC_022903
TCONS_00045493 other upstream 3350663 18369702 ~ 18369817 (+) True XLOC_022882
TCONS_00045572 other downstream 708144 22456844 ~ 22456961 (+) True XLOC_022929
TCONS_00045578 other downstream 1340689 23089389 ~ 23089505 (+) True XLOC_022933
TCONS_00045587 other downstream 2092984 23841684 ~ 23932525 (+) True XLOC_022942
TCONS_00045597 other downstream 2706932 24455632 ~ 24455748 (+) True XLOC_022952
TCONS_00045600 other downstream 2978258 24726958 ~ 24730970 (+) False XLOC_022954

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1081124 True 1086 TUCP 0.52 5 NC_048575.1 15451327 ~ 15455744 (-)