XLOC_022916 (cdk8)


Basic Information

Item Value
gene id XLOC_022916
gene name cdk8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21514283 ~ 21539344 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045554
TTCACGACGCTTTGCGACACTGCCGTACGTGGACGCTCAACTCTCCCGGGTGAGATACCGGCTGAGCGGCGCAGTTGCACAGAAATATCAAAGAAAGCGACTGTTAGTCCAATAACACTCTGCACTTTGTGTCGGATCAAAAGCACACTCGCTCTACACGTCGTTTCAGCCGCCCGTGATCGCTCGCGGTAAATGAGGACTCTTTAATCGAGCTCAGAGCGACGCGAGGGAAGGCAACTAATTGTCTAAACGGGGCTTGAAGTAAGTTGCCTCCCCAGCGGCGCTTTAAAGGGAAGCCACAGCCCGGATCCCCAGAATCACGCCGAAAATGGACTATGACTTCAAAGTGAAGCTCACCGGGGAGAGAGAACGAGTCGAGGACCTCTTTGAGTACGAAGGATGTAAAGTTGGACGGGGGACTTATGGCCATGTGTACAAAGCGAAGAGGAAAGATGGGAAGGATGATAAAGATTATGCTCTGAAGCAGATTGAAGGCACAGGGATCTCCATGTCCGCCTGCAGAGAGATAGCACTGCTGCGTGAACTAAAGCACCCCAATGTGATCTCACTGCAGAAGGTTTTCCTGTCACATGCAGACCGCAAAGTTTGGCTTCTCTTTGACTACGCTGAACATGACCTCTGGCACATCATCAAGTTCCACAGAGCCTCTAAGGCCAATAAGAAGCCTCTTCAGCTGCCGCGTGGGATGGTAAAGTCTTTGCTCTACCAGATCCTGGACGGCATCCACTATTTGCACGCCAACTGGGTCCTGCACAGAGACCTGAAACCTGCCAACATATTGGTAATGGGAGAAGGTCCTGAAAGAGGACGTGTGAAGATAGCTGATATGGGTTTTGCACGGCTCTTCAACTCACCACTGAAGCCTTTAGCGGATCTGGATCCAGTAGTTGTTACGTTCTGGTACAGAGCACCAGAGTTGCTGCTGGGAGCCAGGCATTACACCAAAGCCATCGATATCTGGGCAATTGGCTGTATCTTTGCTGAGCTTTTGACCTCAGAGCCCATCTTCCATTGTCGACAGGAGGACATTAAGACCAGTAATCCCTACCATCACGATCAGCTCGACCGCATCTTTAATGTCATGGGCTTTCCTGCAGACAAAGACTGGGAGGACATTAAGAAGATGCCGGAACACTCGACACTGATGAAAGACTTTAGGAGGAATACGTACACTAACTGCAGCCTTATAAAGTATATGGAGAAGCATAAAGTCAAGCCTGACAGCAAAGCATTCCACTTGCTGCAAAAGCTGCTTACCATGGACCCAATCCGCAGAATCACATCTGAGCAGGCCATGCAGGACCCGTACTTCCTGGAGGAGCCTTTACCCACATCTGATGTCTTTGCTGGCTGCCAGATTCCTTATCCTAAAAGAGAATTCCTGACGGAAGAGGAGCCAGAAGACAAGGCAGATAAAAAaaaccagcagcagcagcagcaggggaACAACCACACCAATGGGGCAGGGCACACAGGTAACCCTGACAACAGCCACGCACAAGGCCCGCCTCTGAAGAAGGTGAGAGTGGTTCCGCCCACCACTACCTCAAGTGGCCTGATCATGACCTCAGATTACCAGCGCTCCAATCCACATGCTGCCTACCAGAACCCAGGACCAAGCACATCATTGCCCCAAAGCAGCATGGGATACTCCTCTACCTCCCAGCAGCCTCCACAGTACTCGCACCAGACCCATCGTTACTGAGTCAGGCCACACCCCTCCGCTCACAGTGCCCAATAGGGAGAATGTACTTAGGGAGGAGGGTGTGGCCTCGAGCCAAACCTCCCTCTTTTACCCCACTGGGCGCTTTGCTGTGCAGCATTTCCATAGAGACACCGCAGGAACAGTAACCGTAAAGCTAACATAACAAAGCGTCACCCTATCATACAGCCGACATTATCCTCTGCTGAAACaaggagaaagaaaaaataatgaaataagtaGTGGGAATAAAAAAAGCTGATGAAAAACGGATATTTGTTCCATTGGTGATAGTTTGAGTGTTCGCTGCAAGTCTGTGATTAATaacacacaaaaagaaaaacaaaaaagcaacaaGCATTCTCAATATGTGGTACTGAACAGCTGCACTATGTAGTGAGACTGGGTTTTGGATTGGTTTGGTCCAATCTCTTTAGCTCCAGTCCTTCTTGCCCTCACTTTGAAAATCTGTTGGCCTCTCCAAGACTTAAAGCTGCTATGTGACTGCCAGCAAAGACAGAATGACGTTTGTCtactgtctgtctatccgtctgcccttacacacacacgtacacacacacacacacgtacacacacatacacacaaatactgaAGCACTCACTCTTTTAGCCCATTGCTGGGGACCGAATTTCTCTGTGCTGGAGCTGCTGACTGAAGCATAAGGAGAACCTCTAGTGCCCCCTGCTGGATTATACTGGTAGAAggcgatttaaaaaagaaaagaaaacaacaaacttGATTTTTAGTagttaataatttaatgttttggTTTTTACGTTAGGAGAGGTCAGCAACTTCCATTTTGCTGTCAGACAGACTATTACGTGTGAATGATCGGCCTTAGAACTTCATGACAAAAGTTGTGTTGACAGCAGATTGAACATGCATTGTACTgtattgtaatgaaatattttacaTGAAACAAATATCCTGACAATAAAAGtggaagcatttaaaaaaaata
>TCONS_00045555
CACATCATCAAGTTCCACAGAGCCTCTAAGGCCAATAAGAAGCCTCTTCAGCTGCCGCGTGGGATGGTAAAGTCTTTGCTCTACCAGATCCTGGACGGCATCCACTATTTGCACGCCAACTGGGTCCTGCACAGAGACCTGAAACCTGCCAACATATTGGTAATGGGAGAAGGTCCTGAAAGAGGACGTGTGAAGATAGCTGATATGGGTTTTGCACGGCTCTTCAACTCACCACTGAAGCCTTTAGCGGATCTGGATCCAGTAGTTGTTACGTTCTGGTACAGAGCACCAGAGTTGCTGCTGGGAGCCAGGCATTACACCAAAGCCATCGATATCTGGGCAATTGGCTGTATCTTTGCTGAGCTTTTGACCTCAGAGCCCATCTTCCATTGTCGACAGGAGGACATTAAGACCAGTAATCCCTACCATCACGATCAGCTCGACCGCATCTTTAATGTCATGGGCTTTCCTGCAGACAAAGACTGGGAGGACATTAAGAAGATGCCGGAACACTCGACACTGATGAAAGACTTTAGGAGGAATACATATTAACCTCTGTACACCCTCTCAGCTGCAAAAGCTGCTTACCATGGACCCAATCCGCAGAATCACATCTGAGCAGGCCATGCAGGACCCGTACTTCCTGGAGGAGCCTTTACCCACATCTGATGTCTTTGCTGGCTGCCAGATTCCTTATCCTAAAAGAGAATTCCTGACGGAAGAGGAGCCAGAAGACAAGGCAGATAAAGTAAGAAATGtgtgttttctgtctttt

Function

symbol description
cdk8 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be part of mediator complex. Predicted to be active in nucleus. Orthologous to human CDK8 (cyclin dependent kinase 8).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030903-2 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be part of mediator complex. Predicted to be active in nucleus. Orthologous to human CDK8 (cyclin dependent kinase 8).

Ensembl:

ensembl_id ENSDARG00000016496

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045554 False 2709 mRNA 0.48 13 21514283 21539344
TCONS_00045555 True 775 processed_transcript 0.49 7 21530004 21534432

Neighbor

gene id symbol gene type direction distance location
XLOC_022915 AL929009.1 coding upstream 11714 21501859 ~ 21502569 (+)
XLOC_022914 shisa2b coding upstream 152782 21346796 ~ 21361501 (+)
XLOC_022913 NA coding upstream 206269 21307567 ~ 21308014 (+)
XLOC_022912 CU915780.1 coding upstream 241555 21272612 ~ 21272728 (+)
XLOC_022911 usf3 coding upstream 310407 21187027 ~ 21203876 (+)
XLOC_022917 wasf3b coding downstream 1498 21540842 ~ 21578265 (+)
XLOC_022918 rpl21 coding downstream 82310 21621654 ~ 21627293 (+)
XLOC_022919 AL929009.2 coding downstream 90381 21629725 ~ 21629840 (+)
XLOC_022920 gtf3ab coding downstream 101291 21640635 ~ 21642858 (+)
XLOC_022921 si:ch211-140b10.6 coding downstream 137577 21676921 ~ 21681424 (+)
XLOC_022904 NA non-coding upstream 595871 20916745 ~ 20918412 (+)
XLOC_022903 CR931724.1 non-coding upstream 725999 20788168 ~ 20788284 (+)
XLOC_022924 NA non-coding downstream 343601 21882945 ~ 21883972 (+)
XLOC_022928 NA non-coding downstream 529512 22068856 ~ 22071276 (+)
XLOC_022929 BX005378.1 non-coding downstream 917500 22456844 ~ 22456961 (+)
XLOC_022931 NA non-coding downstream 1184980 22724324 ~ 22737860 (+)

Expression


Co-expression Network