Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00045555 |
| length | 775 |
| RNA type | processed_transcript |
| GC content | 0.49 |
| exon number | 7 |
| gene id | XLOC_022916 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007135.7 |
| NCBI id | CM002908.2 |
| chromosome length | 42172926 |
| location | 21514283 ~ 21539344 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0016592 | mediator complex | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0004693 | cyclin-dependent protein serine/threonine kinase activity | molecular_function |
| GO:0008353 | RNA polymerase II CTD heptapeptide repeat kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030903-2 | Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be part of mediator complex. Predicted to be active in nucleus. Orthologous to human CDK8 (cyclin dependent kinase 8). |
| ensembl_id | ENSDART00000139740 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00045553 | lncRNA | upstream | 27435 | 21501859 ~ 21502569 (+) | True | XLOC_022915 |
| TCONS_00046804 | lncRNA | upstream | 221990 | 21307567 ~ 21308014 (+) | True | XLOC_022913 |
| TCONS_00045547 | lncRNA | upstream | 350461 | 21174928 ~ 21179543 (+) | True | XLOC_022910 |
| TCONS_00045535 | lncRNA | upstream | 611592 | 20916745 ~ 20918412 (+) | False | XLOC_022904 |
| TCONS_00045520 | lncRNA | upstream | 1452708 | 20060772 ~ 20077296 (+) | False | XLOC_022896 |
| TCONS_00045566 | lncRNA | downstream | 195659 | 21730091 ~ 21730875 (+) | True | XLOC_022923 |
| TCONS_00046969 | lncRNA | downstream | 348513 | 21882945 ~ 21883972 (+) | True | XLOC_022924 |
| TCONS_00046970 | lncRNA | downstream | 534424 | 22068856 ~ 22071276 (+) | True | XLOC_022928 |
| TCONS_00045573 | lncRNA | downstream | 951278 | 22485710 ~ 22486773 (+) | False | XLOC_022930 |
| TCONS_00045574 | lncRNA | downstream | 951278 | 22485710 ~ 22488167 (+) | False | XLOC_022930 |
| TCONS_00045552 | mRNA | upstream | 168503 | 21346796 ~ 21361501 (+) | True | XLOC_022914 |
| TCONS_00045548 | mRNA | upstream | 326128 | 21187027 ~ 21203876 (+) | False | XLOC_022911 |
| TCONS_00045550 | mRNA | upstream | 327215 | 21192431 ~ 21202789 (+) | True | XLOC_022911 |
| TCONS_00045549 | mRNA | upstream | 337903 | 21187136 ~ 21192101 (+) | False | XLOC_022911 |
| TCONS_00045543 | mRNA | upstream | 346113 | 21174523 ~ 21183891 (+) | False | XLOC_022910 |
| TCONS_00045556 | mRNA | downstream | 6410 | 21540842 ~ 21578265 (+) | True | XLOC_022917 |
| TCONS_00045557 | mRNA | downstream | 87222 | 21621654 ~ 21625525 (+) | False | XLOC_022918 |
| TCONS_00045558 | mRNA | downstream | 87941 | 21622373 ~ 21627293 (+) | True | XLOC_022918 |
| TCONS_00045560 | mRNA | downstream | 106203 | 21640635 ~ 21642858 (+) | True | XLOC_022920 |
| TCONS_00045561 | mRNA | downstream | 142489 | 21676921 ~ 21681424 (+) | True | XLOC_022921 |
| TCONS_00045551 | other | upstream | 257276 | 21272612 ~ 21272728 (+) | True | XLOC_022912 |
| TCONS_00045533 | other | upstream | 741720 | 20788168 ~ 20788284 (+) | True | XLOC_022903 |
| TCONS_00045493 | other | upstream | 3160187 | 18369702 ~ 18369817 (+) | True | XLOC_022882 |
| TCONS_00045489 | other | upstream | 3452345 | 18077543 ~ 18077659 (+) | True | XLOC_022880 |
| TCONS_00045488 | other | upstream | 3791369 | 17738519 ~ 17738635 (+) | True | XLOC_022879 |
| TCONS_00045559 | other | downstream | 95293 | 21629725 ~ 21629840 (+) | True | XLOC_022919 |
| TCONS_00045565 | other | downstream | 186048 | 21720480 ~ 21748700 (+) | False | XLOC_022923 |
| TCONS_00045572 | other | downstream | 922412 | 22456844 ~ 22456961 (+) | True | XLOC_022929 |
| TCONS_00045578 | other | downstream | 1554957 | 23089389 ~ 23089505 (+) | True | XLOC_022933 |
| TCONS_00045587 | other | downstream | 2307252 | 23841684 ~ 23932525 (+) | True | XLOC_022942 |
