XLOC_022913


Basic Information

Item Value
gene id XLOC_022913
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21307567 ~ 21308014 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046804
AATTTGTTTGTTCAACTGGTCGTTTATGTTAAGATTTCATTATTCACAGTACTTTATATCTATTTTCTGAACACAAACTAATTGCGATGCTTGTGATTGGCCAGTGGGCAAGTCAGTGTTTCGATACTGATTTATAaattaaaagtacttttaaaaaggAAATGTGAATTGTTTCGGTGCAGTTTACAGCAAGGATGATGACTATGATtaatcattcatacattttccttcagcttagtccatttattaatcaggggtcgccacaacagaatgaaccgccgacttatctagcatatgttttacgctacagcagattcccttccagctgcaacccaacactgggaaacacccatacactctcattcacacacatacactacagccaatttagcttattcaattcacctataccacatgccttcggacttgtgggagaaactgaaGAAGT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0044297 cell body cellular_component
GO:0150034 distal axon cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046804 True 448 lncRNA 0.38 1 21307567 21308014

Neighbor

gene id symbol gene type direction distance location
XLOC_022912 CU915780.1 coding upstream 34839 21272612 ~ 21272728 (+)
XLOC_022911 usf3 coding upstream 103691 21187027 ~ 21203876 (+)
XLOC_022910 naa50 coding upstream 123676 21174523 ~ 21183891 (+)
XLOC_022909 ccdc191 coding upstream 187385 21092156 ~ 21120182 (+)
XLOC_022908 drd3 coding upstream 301248 20968308 ~ 21006319 (+)
XLOC_022914 shisa2b coding downstream 38782 21346796 ~ 21361501 (+)
XLOC_022915 AL929009.1 coding downstream 193845 21501859 ~ 21502569 (+)
XLOC_022916 cdk8 coding downstream 206269 21514283 ~ 21539344 (+)
XLOC_022917 wasf3b coding downstream 232828 21540842 ~ 21578265 (+)
XLOC_022918 rpl21 coding downstream 313640 21621654 ~ 21627293 (+)
XLOC_022904 NA non-coding upstream 389155 20916745 ~ 20918412 (+)
XLOC_022903 CR931724.1 non-coding upstream 519283 20788168 ~ 20788284 (+)
XLOC_022896 NA non-coding upstream 1230271 20060772 ~ 20077296 (+)
XLOC_022895 NA non-coding upstream 1252609 20054470 ~ 20054958 (+)
XLOC_022919 AL929009.2 non-coding downstream 321711 21629725 ~ 21629840 (+)
XLOC_022924 NA non-coding downstream 574931 21882945 ~ 21883972 (+)
XLOC_022928 NA non-coding downstream 760842 22068856 ~ 22071276 (+)
XLOC_022929 BX005378.1 non-coding downstream 1148830 22456844 ~ 22456961 (+)

Expression


Co-expression Network