XLOC_022920 (gtf3ab)


Basic Information

Item Value
gene id XLOC_022920
gene name gtf3ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21640635 ~ 21642858 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045560
AACACAAACTACCCGGCGCACTCAGATGGTACGGTCCAATCACAATAAAACGTAGCTCAAGTGAAAATCGTTTGTGGGCCAAAAAGCGACCTGCCACCCTCTGAAATCAGCAGTTTATGTTCAGTTAGAATGGGAGAAAGAATCCAAGACCCGAATAAACACTTCACTTGTACTTTCGCTGACTGTAAAGCCACGTTTTCAAAGCTGTGGAAGTTGGAGGTGCATTACTGCAGACACACGGGGCTGAAACCATTTGCATGTGGAGACTGTGAGAAGACATTTTGCACCCGTTATCAGCTCACCCGTCATCAGCTGAGCCACAGTGGAGAGAAGCCTTACCTGTGTTCAGTCAGCGGGTGTTCAGCTGCGTTCTCCACTCCTGGTAGCTTGAGGAACCACATTGCTCAGGTTCACGACAACAAAGTCCGGCATTATGTATGCAACTATCAAGGATGTGCAAAGGAATTCCATAAAAAGAAGCAACTAAAGACTCACTTGTGTGAGCACACCAATGAGTTGTCTTTTAAATGTGACCATGAGAAATGCAACAACAAATTTGCTTCCCCTAAAGCTCTTAAACGGCATAGGAAGCTGCATGAAGGTTACCCATGTGGTGAGGAAAACTGTAACTTCAAAGGAAACACTTGGTCCGAGTATCTGAAGCATCGAAGGACTGCACACAGAGTAAACCTTCCATGTAATCAATGCAAGAAGGTTTTCCACAAAGTCTGCTTTttgcaaatgcataaaaagtttgtTCACTCTGGAGAGCGGCGCATGTTTAAATGCACTCGAGAGGGTTGCCAAAAAAGTTACACAAGAAGATTTAACCTTGAGAATCACGTTCTAGACTTTCATGAAGGAAAGCGTGATTTCACCTGCCATTTTACAGGTTGTGATAAAGCCTTTGCTATGGAGGAAAGTTTAAAGAGGCATTTTGTGGTGCATATGCCACAGAAAACAAAACCACAGAAGCCAAAAGTCAAGCCGAAACGCAAGAAGACCTCCAAAGCTAAAACGTCTGATGCAGCCAAACTGTCTGAGCATCTGCAAAAAGTCTCCTTGACCAAGACGCCATTGCCTTAATTTCCACAAGAAACCCTTTCATTTTTGTCCCATTATTTAcgcagtttaatttattttatttttttaatttaatttttataaaccaATTTCAGTTCAGATCACTTTATGAAATAAACGATCACTGCTGCA

Function

symbol description
gtf3ab Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Is expressed in ovary and testis. Orthologous to human GTF3A (general transcription factor IIIA).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7698 Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Is expressed in ovary and testis. Orthologous to human GTF3A (general transcription factor IIIA).

Ensembl:

ensembl_id ENSDARG00000071583

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045560 True 1215 mRNA 0.42 9 21640635 21642858

Neighbor

gene id symbol gene type direction distance location
XLOC_022919 AL929009.2 coding upstream 10795 21629725 ~ 21629840 (+)
XLOC_022918 rpl21 coding upstream 13342 21621654 ~ 21627293 (+)
XLOC_022917 wasf3b coding upstream 62370 21540842 ~ 21578265 (+)
XLOC_022916 cdk8 coding upstream 101291 21514283 ~ 21539344 (+)
XLOC_022915 AL929009.1 coding upstream 138066 21501859 ~ 21502569 (+)
XLOC_022921 si:ch211-140b10.6 coding downstream 34063 21676921 ~ 21681424 (+)
XLOC_022922 pdx1 coding downstream 41331 21684189 ~ 21686706 (+)
XLOC_022923 pan3 coding downstream 77446 21720304 ~ 21748700 (+)
XLOC_022924 NA coding downstream 240087 21882945 ~ 21883972 (+)
XLOC_022925 sat1b coding downstream 331071 21973929 ~ 21978844 (+)
XLOC_022913 NA non-coding upstream 332621 21307567 ~ 21308014 (+)
XLOC_022912 CU915780.1 non-coding upstream 367907 21272612 ~ 21272728 (+)
XLOC_022904 NA non-coding upstream 722223 20916745 ~ 20918412 (+)
XLOC_022928 NA non-coding downstream 425998 22068856 ~ 22071276 (+)
XLOC_022929 BX005378.1 non-coding downstream 813986 22456844 ~ 22456961 (+)
XLOC_022931 NA non-coding downstream 1081466 22724324 ~ 22737860 (+)
XLOC_022933 CR361560.1 non-coding downstream 1446531 23089389 ~ 23089505 (+)

Expression


Co-expression Network