RNA id: TCONS_00045567


Basic Information

Item Value
RNA id TCONS_00045567
length 1340
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_022925
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21973929 ~ 21978844 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAAATCCGCCGGGTCAGTTGCTGCATGCGAGTCCCACACAGGAGAAGCCCAAACTTGACAGCGCAGGGTAAAACCCGGGACAGCGAATGAAGAAACACCTTTTGCTTCACTTCACATATAGAGGACTAGTGAGAAAAGGGAAAAAGAGTAAAAGAAGAAAATGGCCAATTTTAATTTGCGTAAAGCGGAGCCCAAAGACGTGCCTGACATATTGCGACTCATAAAGGAACTCGCGAAGTATGAAGAAATGGAAGACCAAGTTCTTATAACTGAGAAAGATCTGCTCGAGGACGGTTTCGGAGAGCACCCGTTTTACCACTGTGTGGTCGCAGACGTGTCAGCCGAGCATCAGAAAGTCGAAGGTTATTCTGTGATTGGATTTGCAATGTATTACTTCACCTATGACCCGTGGATTGGCAAGTTACTGTACCTTGAAGACTTTTACGTCATGAAAGAGTACAGAGGTTTTGGAATTGGATCTGAAATCCTGAAACACCTTAGTGATACGGCAGTGAAGAATCGTTGCAGCAGCATGCATTTCATCGTGGCTGAATCCAACAAGACGTCCATCGACTTTTACAAGCGTCGCGGGGCTTCAGACCTCTCGCTGCAGGAGGGTTGGCGACTTTTCAGGATCGATAAAGAGAATCTTCTGAAAATGTCTGCTGAAGAGTGAGCTGGCCGACGGTCCAGTGTTCAGGGAGAACTAAAGACAGCTCACAATTTCTCAGTTTGTAGAtctttaattcaatattttagaTACTCTGTGTTATTGATTATATTAACAAACAGTAATGTACTCTAGAAGAAGTTACTGTAGTACTTGTGTCATATTCTGTAGTGTATATGTAAGATTAGCTTATCAATCAGCTTTTTTGTATCcaatttaatgtattaaaaatctaaacaaataaatattaagaatTATATTTAAGTAATACCTTCAGGCTTTCCTTCTAATACAAATGTGAAATTCACAGTGGTAAAATTGGGACTGCTGAATGCACAGAATGGATCCTGGACGATGCTGTAATTTGCAAAATGTCTCTTTGTTTATGCACAGACCAAATTCATGGTTTGTGAAATTGTAAGTTACTATAAAACTTATAAATTGGATCTTTGTTTAGTGACATTGAAAACCCTGGAGAAAGTGAAGCGAGCACCCATCTAGAAAGCTCTGGAAATGGatgtataagtaaataaatattcagCAACATTCAGATTCGCACAGTACAAGTCATGCAGGTGATTCTGTCTTTCAGCTTGGTCCAAATGGTTGCTattataatgtgcatttatatataaaagtACATTTATATAATTCACAAAACATCGCTG

Function

GO:

id name namespace
GO:0032918 spermidine acetylation biological_process
GO:0001525 angiogenesis biological_process
GO:0019809 spermidine binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0008080 N-acetyltransferase activity molecular_function
GO:0004145 diamine N-acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-39 Enables diamine N-acetyltransferase activity. Acts upstream of or within angiogenesis. Is expressed in several structures, including digestive system; eye; gill; heart; and pleuroperitoneal region. Orthologous to human SAT1 (spermidine/spermine N1-acetyltransferase 1).

Ensembl:

ensembl_id ENSDART00000042495

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046969 lncRNA upstream 89957 21882945 ~ 21883972 (+) True XLOC_022924
TCONS_00045566 lncRNA upstream 243054 21730091 ~ 21730875 (+) True XLOC_022923
TCONS_00045553 lncRNA upstream 471360 21501859 ~ 21502569 (+) True XLOC_022915
TCONS_00046804 lncRNA upstream 665915 21307567 ~ 21308014 (+) True XLOC_022913
TCONS_00045547 lncRNA upstream 794386 21174928 ~ 21179543 (+) True XLOC_022910
TCONS_00046970 lncRNA downstream 90012 22068856 ~ 22071276 (+) True XLOC_022928
TCONS_00045573 lncRNA downstream 506866 22485710 ~ 22486773 (+) False XLOC_022930
TCONS_00045574 lncRNA downstream 506866 22485710 ~ 22488167 (+) False XLOC_022930
TCONS_00045576 lncRNA downstream 745480 22724324 ~ 22737860 (+) True XLOC_022931
TCONS_00046971 lncRNA downstream 1251201 23230045 ~ 23230743 (+) True XLOC_022935
TCONS_00045564 mRNA upstream 225229 21720321 ~ 21748700 (+) False XLOC_022923
TCONS_00045563 mRNA upstream 248935 21720304 ~ 21724994 (+) False XLOC_022923
TCONS_00045562 mRNA upstream 287223 21684189 ~ 21686706 (+) True XLOC_022922
TCONS_00045561 mRNA upstream 292505 21676921 ~ 21681424 (+) True XLOC_022921
TCONS_00045560 mRNA upstream 331071 21640635 ~ 21642858 (+) True XLOC_022920
TCONS_00045568 mRNA downstream 42831 22021675 ~ 22031079 (+) False XLOC_022926
TCONS_00045569 mRNA downstream 43265 22022109 ~ 22030868 (+) True XLOC_022926
TCONS_00045570 mRNA downstream 61120 22039964 ~ 22059340 (+) False XLOC_022927
TCONS_00045571 mRNA downstream 77542 22056386 ~ 22059801 (+) True XLOC_022927
TCONS_00045575 mRNA downstream 506866 22485710 ~ 22488740 (+) True XLOC_022930
TCONS_00045565 other upstream 225229 21720480 ~ 21748700 (+) False XLOC_022923
TCONS_00045559 other upstream 344089 21629725 ~ 21629840 (+) True XLOC_022919
TCONS_00045555 other upstream 439497 21530004 ~ 21534432 (+) True XLOC_022916
TCONS_00045551 other upstream 701201 21272612 ~ 21272728 (+) True XLOC_022912
TCONS_00045533 other upstream 1185645 20788168 ~ 20788284 (+) True XLOC_022903
TCONS_00045572 other downstream 478000 22456844 ~ 22456961 (+) True XLOC_022929
TCONS_00045578 other downstream 1110545 23089389 ~ 23089505 (+) True XLOC_022933
TCONS_00045587 other downstream 1862840 23841684 ~ 23932525 (+) True XLOC_022942
TCONS_00045597 other downstream 2476788 24455632 ~ 24455748 (+) True XLOC_022952
TCONS_00045600 other downstream 2748114 24726958 ~ 24730970 (+) False XLOC_022954

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_04823817_04825235.mRNA True 580 mRNA 0.47 6 CI01000018 4823817 ~ 4825299 (+)
rainbow trout (Oncorhynchus mykiss) TU1081635 True 1139 lncRNA 0.44 6 NC_048575.1 16405167 ~ 16408397 (+)