Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00042074 |
| length | 911 |
| lncRNA type | antisense_over |
| GC content | 0.43 |
| exon number | 4 |
| gene id | XLOC_020228 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 10300403 ~ 10354336 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045110 | intermediate filament bundle assembly | biological_process |
| GO:0035270 | endocrine system development | biological_process |
| GO:0045165 | cell fate commitment | biological_process |
| GO:0021906 | hindbrain-spinal cord boundary formation | biological_process |
| GO:0048340 | paraxial mesoderm morphogenesis | biological_process |
| GO:0048341 | paraxial mesoderm formation | biological_process |
| GO:0061053 | somite development | biological_process |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00040213 | lncRNA | upstream | 77743 | 10214994 ~ 10222660 (+) | False | XLOC_020226 |
| TCONS_00042073 | lncRNA | upstream | 77743 | 10216804 ~ 10222660 (+) | True | XLOC_020226 |
| TCONS_00041885 | lncRNA | upstream | 135538 | 10158463 ~ 10164865 (+) | False | XLOC_020223 |
| TCONS_00042071 | lncRNA | upstream | 205113 | 10073420 ~ 10095290 (+) | False | XLOC_020221 |
| TCONS_00042072 | lncRNA | upstream | 205113 | 10074865 ~ 10095290 (+) | False | XLOC_020221 |
| TCONS_00040238 | lncRNA | downstream | 728440 | 11082776 ~ 11085979 (+) | True | XLOC_020240 |
| TCONS_00042076 | lncRNA | downstream | 736292 | 11090628 ~ 11098487 (+) | False | XLOC_020241 |
| TCONS_00040239 | lncRNA | downstream | 743176 | 11097512 ~ 11098487 (+) | True | XLOC_020241 |
| TCONS_00040240 | lncRNA | downstream | 748655 | 11102991 ~ 11104983 (+) | False | XLOC_020242 |
| TCONS_00041886 | lncRNA | downstream | 748656 | 11102992 ~ 11104289 (+) | False | XLOC_020242 |
| TCONS_00040215 | mRNA | upstream | 37962 | 10232527 ~ 10262441 (+) | True | XLOC_020227 |
| TCONS_00040214 | mRNA | upstream | 81187 | 10215558 ~ 10219216 (+) | False | XLOC_020226 |
| TCONS_00040211 | mRNA | upstream | 87901 | 10201826 ~ 10212502 (+) | False | XLOC_020225 |
| TCONS_00040212 | mRNA | upstream | 91857 | 10201871 ~ 10208546 (+) | True | XLOC_020225 |
| TCONS_00040210 | mRNA | upstream | 101389 | 10166407 ~ 10199014 (+) | True | XLOC_020224 |
| TCONS_00040217 | mRNA | downstream | 86655 | 10440991 ~ 10514343 (+) | False | XLOC_020229 |
| TCONS_00040219 | mRNA | downstream | 188993 | 10543329 ~ 10559760 (+) | False | XLOC_020230 |
| TCONS_00040221 | mRNA | downstream | 252237 | 10606573 ~ 10641287 (+) | False | XLOC_020231 |
| TCONS_00040222 | mRNA | downstream | 252527 | 10606863 ~ 10639022 (+) | True | XLOC_020231 |
| TCONS_00040223 | mRNA | downstream | 290752 | 10645088 ~ 10658520 (+) | False | XLOC_020232 |
| TCONS_00040207 | other | upstream | 136239 | 10159158 ~ 10164164 (+) | False | XLOC_020223 |
| TCONS_00040182 | other | upstream | 510599 | 9787067 ~ 9789804 (+) | True | XLOC_020205 |
| TCONS_00040167 | other | upstream | 916919 | 9359899 ~ 9383484 (+) | True | XLOC_020197 |
| TCONS_00040142 | other | upstream | 1514110 | 8786167 ~ 8786293 (+) | False | XLOC_020180 |
| TCONS_00040140 | other | upstream | 1531010 | 8766367 ~ 8769393 (+) | True | XLOC_020179 |
| TCONS_00040218 | other | downstream | 139919 | 10494255 ~ 10513982 (+) | True | XLOC_020229 |
| TCONS_00040220 | other | downstream | 199392 | 10553728 ~ 10558972 (+) | True | XLOC_020230 |
| TCONS_00040228 | other | downstream | 318815 | 10673151 ~ 10678490 (+) | False | XLOC_020234 |
| TCONS_00040250 | other | downstream | 1308281 | 11662617 ~ 11674637 (+) | True | XLOC_020251 |
| TCONS_00040255 | other | downstream | 1540026 | 11894362 ~ 11894479 (+) | True | XLOC_020255 |
