RNA id: TCONS_00040219


Basic Information

Item Value
RNA id TCONS_00040219
length 2552
RNA type mRNA
GC content 0.51
exon number 14
gene id XLOC_020230
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10543329 ~ 10559760 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTGAATGAATACCGAACCTTCAGAAATGCCTCCAACTTTTCCTCTTTTcggttatttgtttgtttggtcaacTACTTTTATGTAAACATTTCAGAATTGCACTTTATCTGGAGTGTTTACTTTTGGTTTGTCATGTCGGTGATTTGACGGGCAGTTGCAGGTTATGCAGGAATCTGAGGAGCGTAAATCAAGCAGGAGCTCGTTGACATGGACTTTCCCCCGAGCAAGAGACTGAAGGGCCCTCAGGTGAAGACTGGACCCGACCCGTTTGACGATGACATTGATTTCACCCAGGATGATCTGGAGCAGATTGATATTATTGCGTCTCAGGCCATCAGCGCAGACGTCCAGAACAGCGGCTCTAAGAGATCTTTCGACGCTGTGCTCGCTTGCGCTGATGAACCGAGCAAAGCTCCAGTGAGGTCCGGGCGGAAAACATTCGCCCTTGGAGATGCCTGCAGCAGCAGCACTTACAACAACACACACGCTCAAAGGAAAGAGCCTTCTGCAGATGGTCCTTCCAGTAAAGATGGGGATGATCTCTATTACAAACAATTAGAGGAGCAGCAAGCAGAGCTGAAGAAAAAGCTgaaggaggtggaggaggagatcTTGATGAAGAACGGGGAGATTCGAGTGCTGCGGGACTCTCTGAAACAGGCTCATCAGGAGCGCGAGCAGCAGCGGCAGGCGCAGATCATCCTGGAGAAGGAGAAAACTCAGGCTCAGAGCGACCGAGAGAAGGAGCTctccaggaagGTGCAGTCGCTGCAGTCGGAGCTGCACTTTAAGGAGGCTGAGATGAACGAGATGAGAGGGAAACTGCAAAGCGTGGAGCGTGGAGGAAAGCAGAGCGGCACACCTGCACGACAAGCTGTTAAGTCTCCTTTAAGTCGAACGTTCATGACGAAGGAAAACTTCTCCGCCGAAATCTCAAAGAGAACGTCTCCTGTCAAACCAGGCCCTTCATCAGACAatgcagcaCTGTCCAGATGTTTACTCCCAGAAGAGCAGCGATCGCAGCAATGCATCGCCTCTGATCTTCAAAAGGAAGGATGTGTGTTACTAAAGCTGCTCCTCCAGCAGCCTCTGGATCCCAGTGTTCTGGGTCTCTGTCATCTGCTGTCCATCAGTCCTGACGCTCTGCCCAATATGCTGACACAACACGGATACATCAGTCCtGGATCATTGTCGACCTCCAGCTCGTCCTCCACAGACCTCCGCTCATTTCCTCGTTCTCCGTCTCAGTTCCACCACCTCCAGAGTCTGGCCATGTCCGCTCTCACAGCACTCTCTCTCCATGAGCCTTCCACTGTCTCTCGCCCCTCATCCTGCCCATCAGCAGTGCACTTCCTCCCCCTGCTTTCCTTCCACATCAGCACCTACTGTCAGTCTCTAGAGGTCTTCGACTCCTCCACCAAATCCTCTCTCCACAGCGGCTCTCTGTCCGGCTCTTCAGACTCCAGCCTGAGCTCCGTCCTGGAGGAGTCTCTGAGCGGACAGGAGGAGTTGGCTCTGGCGGCCCTCAGAGCGCTTCAGCACATCGTCTGCTACAGTAAAGAGGCTCTGGAGGATGTGATTCGGATGCAGACTCCTAAAAACATGCTTGGGGAAATTCAAAATCAGATGCCGGTCCTGAGGAGGCTTTTACAGCTTGCAGATCCGGCGTTCAGTACCGCCGCGGGACACCGGGAGGCGCTAGTGAGCTGCAGTTGGAGGATTCTCAGTGTGCTGGCAGAGAGAGCAGAGGATAACCTGATCTCCAGGCTCCAGGTGGTGATGTCCAGTCCAGTGCTGTCTAAATGCCTGACTCTGGAGACCACCTACAGTATCGTCCATCTGTGTGTGAGATTTCTGTCGTTTATCATCTGTAATGACGAGATGGCCTCTAAGCTCTGCTTGCATGACTATCCGTGTCCTTTTCTTAAAATATTCCAGTACGTCACATCCAGACCGGATAAATCCTCTACTGAGGACGCGTGGAGTCGCTTGGAGCTTGTGGTCATCCGGTTATTGACTAAGCTGTTCACACAGAGGGCAGGAACATGGGCGGCTCTTTGCGAATCATCATGCCAGTGTGTTAATGAGGTGGTGCGGACGGTCGTTGTAGTTTTACACCGACAGTGGCTGAAAACGAAATGCAGAGGAGGTCAAACGGTGGGTACACAGATCTGGTCCAGTCCTGGATTGCAAGTACTGAGAGAAGCACTGATGTTACTGCACTGGCTGCTGTTGAAGGATTCAGCATTTTCCGAACACTGTCTGGACGTCTTACACATGTACGATCAGGTCATTCCCGCCATCAGGGACACTTTCCGTCTGCTCCCAGATCTGTCCGAGAGCGAAGAACTGGCTCTGGAGGAGATCTGCAGGTCTGAAACGGAGTATGTTGAGGACATGGATGTGGAAACAGGGTCATAACAATCAAATATAAAGTCAAATTTTGTAACAAACGATGAAAGTTGGTAGAAGCAGTCTGATTTTTTGTCTCATGTCCTCATTTTTAAGACTACAGAACATTGATGATTggaaattaaagaattaattgtA

Function

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-050208-331 Predicted to be involved in DNA damage checkpoint signaling and DNA repair. Orthologous to human ATRIP (ATR interacting protein).

Ensembl:

ensembl_id ENSDART00000091850

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042074 lncRNA upstream 188993 10300403 ~ 10354336 (+) False XLOC_020228
TCONS_00042075 lncRNA upstream 188993 10300417 ~ 10354336 (+) False XLOC_020228
TCONS_00040216 lncRNA upstream 241905 10300526 ~ 10301424 (+) True XLOC_020228
TCONS_00040213 lncRNA upstream 320669 10214994 ~ 10222660 (+) False XLOC_020226
TCONS_00042073 lncRNA upstream 320669 10216804 ~ 10222660 (+) True XLOC_020226
TCONS_00040238 lncRNA downstream 523016 11082776 ~ 11085979 (+) True XLOC_020240
TCONS_00042076 lncRNA downstream 530868 11090628 ~ 11098487 (+) False XLOC_020241
TCONS_00040239 lncRNA downstream 537752 11097512 ~ 11098487 (+) True XLOC_020241
TCONS_00040240 lncRNA downstream 543231 11102991 ~ 11104983 (+) False XLOC_020242
TCONS_00041886 lncRNA downstream 543232 11102992 ~ 11104289 (+) False XLOC_020242
TCONS_00040217 mRNA upstream 28986 10440991 ~ 10514343 (+) False XLOC_020229
TCONS_00040215 mRNA upstream 280888 10232527 ~ 10262441 (+) True XLOC_020227
TCONS_00040214 mRNA upstream 324113 10215558 ~ 10219216 (+) False XLOC_020226
TCONS_00040211 mRNA upstream 330827 10201826 ~ 10212502 (+) False XLOC_020225
TCONS_00040212 mRNA upstream 334783 10201871 ~ 10208546 (+) True XLOC_020225
TCONS_00040221 mRNA downstream 46813 10606573 ~ 10641287 (+) False XLOC_020231
TCONS_00040222 mRNA downstream 47103 10606863 ~ 10639022 (+) True XLOC_020231
TCONS_00040223 mRNA downstream 85328 10645088 ~ 10658520 (+) False XLOC_020232
TCONS_00040224 mRNA downstream 87168 10646928 ~ 10658513 (+) False XLOC_020232
TCONS_00040225 mRNA downstream 91966 10651726 ~ 10658520 (+) True XLOC_020232
TCONS_00040218 other upstream 29347 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040207 other upstream 379165 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040182 other upstream 753525 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040167 other upstream 1159845 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 1757036 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040228 other downstream 113391 10673151 ~ 10678490 (+) False XLOC_020234
TCONS_00040250 other downstream 1102857 11662617 ~ 11674637 (+) True XLOC_020251
TCONS_00040255 other downstream 1334602 11894362 ~ 11894479 (+) True XLOC_020255
TCONS_00040257 other downstream 1557860 12117620 ~ 12117744 (+) True XLOC_020257
TCONS_00040265 other downstream 1815026 12374786 ~ 12374883 (+) True XLOC_020264

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_07889005_07897250.mRNA True 2609 mRNA 0.48 10 CI01000030 7888331 ~ 7897250 (-)