RNA id: TCONS_00040225


Basic Information

Item Value
RNA id TCONS_00040225
length 1432
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_020232
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10645088 ~ 10658520 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGGGGTTTCAAATCACGCCCAATAACGGTTTCTTCCCGGTTGCACGAGGTCCGTCAGAGAGCCACATCATCCCGGTCAGAAACCGCGGAACAGAGGAAACTCCAGTACTGTTGCGGTTTCGCTTGGTTTTTAGTGTGAAAATGACGGACTGCGAGTGGTTTGACATGACGTGGGGCAGCAGCGCGAGCAGCGGTTACTGCAGCCAGAGCGACTCTGACGAGCACGAGCTTGAGCTCTTCTATACCGCGCGCACGTCTCTGAGGAAGAGCAGAAAGTGCAGAGATAAAGATGAGCAGTCTGAAGTGGACTGGAGGAAACAGGATCTGTCTGTCACTGAAATACAGCAGAAAGTGAAGGAATACAATGCTCAGGTCAACAGTAACCTCTTCATGGTTCTGAATCGTGACGGCTCATACACTGGCTTCATCAAGGTCCAGTTTAAGCTGGCGCGACCCGTGTCTCTTCCTCCTCCCCGCAGcgtctcctcctcctccatctcctCCTCTTGTTTAGGATGGGATGGCGGCTGTCAGGAGCGAACTTCCTTCTACCTGCCCAGAGACACAGTCAAGCACCTGCACATCAGCTCCAGCACCCGTGCCAGAGAGGTCATCCAGGCCCTGCTCAACAAGTTCACTGTGGTGGACAATCCGGCTAAATATTCCCTGTATGAGCGCAGCCAGCGGGACAATCAAGTGTACTTAAGGAAGTTAGCTGATGATGAATGTCCACTTTTCCTGCGTCTGTGTGCTGGACCCAATGAGAAAGTCCTGAGTTTAGTGCTTAAAGAGAATGAAACCGGGGAAGTGAATTGGGATGCGTTCAGTTTTCCTGAACTCCAGAACTTCCTGCGGATTCTCCAGCGGGAGGAAGAAGATCACGTCCGGCAAATCATACGCCGATACACTCTGGCTCGTGATAAGATGAAAGAGGCTATGAAGAACTTCAGCAAGCCTGGCTGAATGAATCTGTGTTTATACCTCACAAACAAGAGAGATCGAGGAGGAAACAAGGCTTATTACTGTCTGAGTCCAAAGAGTGTGTGAAAGAGCCCTTCGTCCTACTGTGGACATAATGAGGGTTGAAAGTGAAATGCAGTGAGCGAGAGAAGAGATGCGTGTGTTTGAAGCATGACTGTTGAGTGTGACTTCACACTGGAGGAAATGCTGCGCTCGTAGCCGTAGATCCAGTGGAGAGATGTCTTCCTGTGGAGAATCTATATATCAGTGCAGATTACAGAGTATTTTCAGCACCATTTAAACTTGTCATAGGAAATTAAACGAGGATTATTTTAATATCTGTATCAAAATGCCACCTGTTAGTGACACAGTAACTTGTCATATTTTGAAGCTCCCATGTATATATTTGGATGTTTGTTGTCAATTATTCTgaaaatagatacaaataaactATTTTTCCCTTTAAAATGA

Function

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04014 Ras signaling pathway
ko04390 Hippo signaling pathway
ko04392 Hippo signaling pathway - multiple species
ko05200 Pathways in cancer
ko05206 MicroRNAs in cancer
ko05219 Bladder cancer
ko05223 Non-small cell lung cancer

ZFIN:

id description
ZDB-GENE-040912-14 Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within intracellular signal transduction and regulation of microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton and nucleus. Is expressed in several structures, including immature eye; intermediate cell mass of mesoderm; nervous system; pharyngeal arch; and ventral mesoderm. Human ortholog(s) of this gene implicated in breast cancer; reproductive organ cancer (multiple); transitional cell carcinoma; and urinary system cancer (multiple). Orthologous to human RASSF1 (Ras association domain family member 1).

Ensembl:

ensembl_id ENSDART00000145459

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042074 lncRNA upstream 297390 10300403 ~ 10354336 (+) False XLOC_020228
TCONS_00042075 lncRNA upstream 297390 10300417 ~ 10354336 (+) False XLOC_020228
TCONS_00040216 lncRNA upstream 350302 10300526 ~ 10301424 (+) True XLOC_020228
TCONS_00040213 lncRNA upstream 429066 10214994 ~ 10222660 (+) False XLOC_020226
TCONS_00042073 lncRNA upstream 429066 10216804 ~ 10222660 (+) True XLOC_020226
TCONS_00040238 lncRNA downstream 424256 11082776 ~ 11085979 (+) True XLOC_020240
TCONS_00042076 lncRNA downstream 432108 11090628 ~ 11098487 (+) False XLOC_020241
TCONS_00040239 lncRNA downstream 438992 11097512 ~ 11098487 (+) True XLOC_020241
TCONS_00040240 lncRNA downstream 444471 11102991 ~ 11104983 (+) False XLOC_020242
TCONS_00041886 lncRNA downstream 444472 11102992 ~ 11104289 (+) False XLOC_020242
TCONS_00040221 mRNA upstream 10439 10606573 ~ 10641287 (+) False XLOC_020231
TCONS_00040222 mRNA upstream 12704 10606863 ~ 10639022 (+) True XLOC_020231
TCONS_00040219 mRNA upstream 91966 10543329 ~ 10559760 (+) False XLOC_020230
TCONS_00040217 mRNA upstream 137383 10440991 ~ 10514343 (+) False XLOC_020229
TCONS_00040215 mRNA upstream 389285 10232527 ~ 10262441 (+) True XLOC_020227
TCONS_00040226 mRNA downstream 1620 10660140 ~ 10663935 (+) False XLOC_020233
TCONS_00040227 mRNA downstream 1658 10660178 ~ 10663258 (+) True XLOC_020233
TCONS_00040229 mRNA downstream 18461 10676981 ~ 10688220 (+) False XLOC_020234
TCONS_00040230 mRNA downstream 19621 10678141 ~ 10692122 (+) True XLOC_020234
TCONS_00040231 mRNA downstream 40029 10698549 ~ 10706873 (+) True XLOC_020235
TCONS_00040220 other upstream 92754 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040218 other upstream 137744 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040207 other upstream 487562 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040182 other upstream 861922 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040167 other upstream 1268242 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040228 other downstream 14631 10673151 ~ 10678490 (+) False XLOC_020234
TCONS_00040250 other downstream 1004097 11662617 ~ 11674637 (+) True XLOC_020251
TCONS_00040255 other downstream 1235842 11894362 ~ 11894479 (+) True XLOC_020255
TCONS_00040257 other downstream 1459100 12117620 ~ 12117744 (+) True XLOC_020257
TCONS_00040265 other downstream 1716266 12374786 ~ 12374883 (+) True XLOC_020264

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_07794056_07801708.mRNA True 1654 mRNA 0.51 7 CI01000030 7793671 ~ 7801708 (-)
rainbow trout (Oncorhynchus mykiss) TU1707323 True 2567 lncRNA 0.46 4 NC_048581.1 79379122 ~ 79382147 (-)