RNA id: XM_021623518.2


Basic Information

Item Value
RNA id XM_021623518.2
length 3285
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110537457
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 32005154 ~ 32027744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAGGCTGCCCCACTGCCATGAGTCCAACACATTCCGCAGCGAGAGGCACTGCACGCTGAATAACCTGCGAGAGAGAAGAGGTAGCCACTGTTGCTGGGGAGTAAAACGATGCTTACTTCTTTGGATTCATTTGAATTGCGAAATTGTGGATTTATACGAATTTGTGGAGGATATTGAATTCAAAAGGATATTACACTGACACGAATCATCATTAAAGgggaaagaggggaagacgGTGTCATGGCAGTTGACTTGTGATTGCACCTATAAGAGCCTAAAAGCCAACAGCCACCTGCATTACTGTCATCTCTAAGTTGGAACACTATCATTATGAAGAAAACGTCTAacaccctcccactctgtctgcttaCCATTCTGCTGCTGTCCCAGATCTGCTCCGGCATCAAATGGCTGGCCCTATCTCACACACCCACGTCCTTACACATCAACCAGACCCAACACTGCAAGCTGCTGCCCGGCCTGGTGTCGTCACAAGCCCAACTGTGTCGGAGCAACCTGGAGCTCATGCAGACCATCATCGCCGCAGCACGCGAGGTCAAGAAGACCTGCCAGAAGACCTTCGCTGACATGCGCTGGAACTGTTCCTCGATTGAAATCCCCAGTGACTCCTCGAGGTATCGTCCAGATCTTGACAGAGGCACGAGGGAGTCAGCGTTTGTGTATGCCCTGTCTGCGGCGGCCATCAGCCACACCATAGCGCAGGCATGCACGTCGGGGGACCTGCGCCTGTGTTCATGCGGCCCCATCCCCGGGGAGATCCCTGAGCCGGGCTACCGCTGGGGCGGATGTGCAGACAACCTGCACTATGGCCTGGTCATGGGCTCCAAGTTCTCTGACGCCCCGATGAAGATGAAGAAGGCAGGCTCCCACGCCAACAAGCTGATGCATCTGCACAACAGTGAAGTGGGGAGACAGGCCCTGAGAGATGCGCTGGTGATGAAGTGTAAGTGTCACGGTGTGTCTGGCTCCTGCTCCATACGGACCTGCTGGAGAGGCCTGCAGGACCTGAAGGACATTGCCATTGACCTGAAGACCAAGTACCTTTCAGCCACTAAGGTGGTGCACAGACCCATGGGTACACGCAAGCAGCTGGTCCCCAAGGACATTGACATCAGGCCCGTCAGAGAGAACGAACTGGTCTACCTGCAGAGCTCTCCGGACTTCTGTACCAAGAACGACAAGCTGGGTTCCGTCGGCACCCAGGACAGGCAATGCAACAAGACGTCCATCGGCAGCGACAGCTGTGACATGATGTGCTGTGGGCGTGGCTACAACCCCTACACAGAGAAGCTGGTGGAGCGCTGCCACTGCAAGTACCACTGGTGCTGCTATGTCACATGTAAAAAGTGTGAGAGGATTGTGGAGAGATACGTCTGCAAATGAGTCCATGTTGTCTActtcatccacccacccacctaacCGCCCCACGTCTATGTGCTGGGGCTACAGATAACCAAAGCACTACGTTACCAAGAAGGCTTACTTTTGTCTTAAGCTTTAGCATGTATATTTTGACAagaaagtgtttatttttgttcattcTTTTTAATTAAACTCTGACTCACAAGCTGGACTTAAAACCTTTTCCATTTTACGAACGCGGACACATGGGTGTTGTGACAATGCCTATTGGTTTACGTGAAGGCCACCGTCCTCGAGGATTTTTTCTTTCCTTTCATAAATGTGCATTACACTTGCCGTACTCGGATATCAAATGTCTATTTTCGTATATACTTTTATTCAAATAAATGATATTGGATTTGTTTTTTGAGGAGAGGGACTGTAGTCTCCTCGTTTGCTGTTGGGGGTATACTTCCAACCTCACTCTGATGTTGACACTCACCGTTTACTTCAGAACCATTCCACGGAATTCAAAGGGTTCTGAAGGATCCATGGTGTTTTTCCTCAAATGGTAGTCCTTTTTTCAACAGAGACAGAcactgaaagaaagagagggaaatcGTGCTCAACACACAAAGGGAACTTAAAGTACTTTTAGTTGTGGAACTTTTAGTAACTGGTATTGAACTCTTGAGCACTGGAGCTTGACTGGGGACTCGCCTGCAGACACACAGTTCTGTGTGCATCGTCAGGATAAGGACAAAGAACTCCCAGTGTTAGAAACAGCACATTATCCCTAGAATGTCTGACATGCAGGTAGTCCAAAGCCTAACACTCAGAGCATGTGAACGGAACACATGGGTCTCCTTTAATGCCGTGTTATGATGAACCACTCTTATGTGGCTGTACATACTGTCTTTTTGTATGCTGAATTAAAGAAAGAAATATTTATAAACTAATTATAGACTCTTTAACAAGCTCtccattttttattttcccaAGACCGCAACTCATCATCATGGTGAATTTTCTTTTTGTAATTTAAAAGAAACTTGGCAAGAGAAATATGTAACCTCACAGGCTGGTGTTTTTGAAATAGACTAGCTATATTTCTTCCCCCCGAAGCATTACTGTAATTAATGACATCTCAAAGTGTTAAGAAAATAACCGTTTCACACAATGACCTGTGACTGTGAGATAAATGCGCACACTTGTAATGTGTTTTAGTTTTCAATCAGAAGGCCAATTGGGATCAACCTCTCAATTACAAAAACCCTGGGAAAGTGTTTGTTTGGACATTCTTCACTGTCACAAGGGCTATTAATTATGATTCTATCATGGGTTTAGCCTAACCCACAAACAATCATCTGGATGAGAAGAGATCTTGGATTGGGCTAAACTTCCAATTAaaaaacaaggcaacagtaaacatgttgcTCCCCACCTTTCAGAGTTTGCATTTTCAATCTCTTGTTATAGCGCCACTATCTgaccaatcagtgtaattttgtaaacaGCGGATCTCTATGGAAAACGCATCATTCACCAAAGTTTCGTAAAAatctgtttagtgttgtctgaGACTAATGTACGAACAAAGGACAGATGGATGGTGACAGATCCACAATCCTCTCCCTGATTTCATCGTGGGAACAACAAAAATAAATCTAATTTATTTTCATACAAAGGGTTACATTTTTTTAGGTTGTTAGTCAAAGGAACAGATCTTGGCAGTTGGCACTCTATAAGGCAGAAGTATAACCCACTGACCAAGCCTTGTGTTGCTTTGTAGTTTTCATGATTCTGAACAGACAGAAATAACTAACTCTTGGCCCATGCCGAGGCTCCAACCTAATCCAGCCGAGCATATGTACCGCTATTGACCTAGCCCGCTTGTGGGAGCAAACTAGAACACTATAGA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K01384 WNT11; wingless-type MMTV integration site family, member 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1208197 lncRNA upstream 25549 31979194 ~ 31979605 (+) True G1060555
TU1208150 lncRNA upstream 37698 31961376 ~ 31967456 (+) True LOC110537456
TU1208178 lncRNA upstream 101061 31903347 ~ 31904093 (+) True G1060536
TU1208177 lncRNA upstream 102558 31902373 ~ 31902596 (+) True G1060535
TU1208175 lncRNA upstream 106430 31898521 ~ 31898724 (+) True G1060533
TU1208245 lncRNA downstream 33256 32061000 ~ 32080346 (+) True G1060602
TU1208371 lncRNA downstream 276460 32304204 ~ 32321208 (+) True G1060718
TU1208468 lncRNA downstream 407813 32435557 ~ 32438057 (+) True LOC110537465
TU1208583 lncRNA downstream 585506 32613250 ~ 32614551 (+) True G1060911
TU1208604 lncRNA downstream 631948 32659692 ~ 32660196 (+) True G1060932
XM_036939504.1 mRNA upstream 9469 31971901 ~ 31995685 (+) True LOC110537454
LOC110537456 mRNA upstream 36212 31962548 ~ 31968942 (+) False LOC110537456
XM_021623515.2 mRNA upstream 44238 31955273 ~ 31960916 (+) False LOC110537455
XM_021623517.2 mRNA upstream 44238 31955541 ~ 31960916 (+) True LOC110537455
XM_021622430.2 mRNA upstream 72516 31917035 ~ 31932638 (+) False stt3a
XM_036937404.1 mRNA downstream 324008 32351752 ~ 32382873 (+) False LOC110537461
XM_036937405.1 mRNA downstream 324008 32351752 ~ 32382873 (+) False LOC110537461
XM_036937406.1 mRNA downstream 324008 32351752 ~ 32382873 (+) True LOC110537461
XM_021623523.2 mRNA downstream 376571 32404315 ~ 32410155 (+) True LOC110537463
XM_021623526.2 mRNA downstream 388713 32416457 ~ 32438081 (+) False LOC110537465
TU1208110 other upstream 193807 31811062 ~ 31811347 (+) True G1060470
TU1207289 other upstream 795797 31207629 ~ 31209357 (+) True G1059685
TU1206610 other upstream 998088 31000227 ~ 31007066 (+) True G1059091
TU1206461 other upstream 1126043 30848538 ~ 30879111 (+) True LOC110537434
TU1206279 other upstream 1488264 30516081 ~ 30516890 (+) True G1058787
TU1210205 other downstream 1331990 33359734 ~ 33366249 (+) False G1062404
TU1210206 other downstream 1331990 33359734 ~ 33362605 (+) False G1062404
TU1210369 other downstream 1480575 33508319 ~ 33508863 (+) True G1062537
TU1210496 other downstream 1630534 33658278 ~ 33661949 (+) True G1062648
TU1211387 other downstream 2739280 34767024 ~ 34770876 (+) True ubb

Expression Profile