G1060932 (LOC106567958)


Basic Information

Item Value
gene id G1060932
gene name LOC106567958
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 32659692 ~ 32660196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1208604
TGTCATCCTTGTTGACGGAGGAAGTGTCTCGCTTGTCTGAGTCTCGGTCTCTCTCGTGGGAGCTGACTGAAGCGCTCCTCTCCGAGTCGCCAGGTTTGAgccagggtggaggggtggggaAGGAGGGCGGTGTGCGGTGCAGCCGGTTCCACGGCTCGTGATTGTTGCTGAAGTGCTGCTGTGCATTGGGGCTGTCTTTATGGCCAAACACAGAGTTAGGCGCTGTTAGGGATTTTAGTGCTGGGTTTCCAAGCCCACCAAAGGCTGCTGTGCTGAGAGAGGCGAGTCCTCCAAATGAGTGAGGCC

Function

NR:

description
autism susceptibility gene 2 protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1208604 True 306 lncRNA 0.58 2 32659692 32660196

Neighbor

gene id symbol gene type direction distance location
cxadr LOC106567957 coding upstream 44702 32555056 ~ 32614990 (+)
btg3 btg3 coding upstream 105036 32546918 ~ 32554656 (+)
LOC110537469 LOC106567749 coding upstream 125006 32504245 ~ 32534686 (+)
LOC110537467 LOC106567956 coding upstream 188321 32458471 ~ 32471371 (+)
prdm15 LOC106567952 coding upstream 204879 32438318 ~ 32454813 (+)
LOC110537474 NA coding downstream 841738 33501934 ~ 33513654 (+)
rnft1 LOC106567963 coding downstream 938743 33598939 ~ 33624023 (+)
ptrh2 ptrh2 coding downstream 1122618 33782814 ~ 33784617 (+)
LOC110537484 LOC106567971 coding downstream 1212819 33873015 ~ 33880271 (+)
abr LOC106567975 coding downstream 1474312 34134508 ~ 34360009 (+)
G1060911 NA non-coding upstream 45141 32613250 ~ 32614551 (+)
LOC110537465 LOC106567954 non-coding upstream 221635 32416457 ~ 32438081 (+)
G1060718 NA non-coding upstream 338484 32304204 ~ 32321208 (+)
G1060602 NA non-coding upstream 579346 32061000 ~ 32080346 (+)
G1060555 NA non-coding upstream 680087 31979194 ~ 31979605 (+)
G1060957 NA non-coding downstream 37800 32697996 ~ 32699061 (+)
G1060990 NA non-coding downstream 102368 32762564 ~ 32762805 (+)
G1060993 NA non-coding downstream 105618 32765814 ~ 32766072 (+)
G1060994 NA non-coding downstream 117069 32777265 ~ 32777653 (+)
G1060995 NA non-coding downstream 120520 32780716 ~ 32780936 (+)
G1060470 NA other upstream 848345 31811062 ~ 31811347 (+)
G1059685 LOC106567926 other upstream 1450335 31207629 ~ 31209357 (+)
G1059091 NA other upstream 1652626 31000227 ~ 31007066 (+)
LOC110537434 NA other upstream 1780581 30848508 ~ 30879117 (+)
G1058787 LOC106567901 other upstream 2142802 30516081 ~ 30516890 (+)
G1062404 NA other downstream 699538 33359734 ~ 33366249 (+)
G1062537 NA other downstream 848123 33508319 ~ 33508863 (+)
G1062648 NA other downstream 998082 33658278 ~ 33661949 (+)
ubb ubb other downstream 2106828 34766968 ~ 34770882 (+)
LOC110537506 LOC106567992 other downstream 2316096 34964222 ~ 34982028 (+)

Expression


Co-expression Network